Detailed information on CNT30522537


BLAST search results

BLAST vs Swiss-Prot:
sp|P84977|GRP3_POPEU, E-value = 2e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678707Setaria italicaSetaria viridis33.7348.7100224forward
CNT30299705Setaria italicaTriticum aestivum10.0927.0294.0367forward
CNT30224351Setaria italicaHordeum vulgare27.2656.3982.87181forward
CNT30684603Setaria italicaTriticum urartu24.754.384.15164forward
CNT30116148Setaria italicaOryza nivara14.6143.1192.7897forward
CNT30558853Setaria italicaPanicum hallii19.5836.3195.38130forward

Expression of CNT30522537

Peptides detected in this lncRNA

>peptide 1 (33 aa)
ANKNLAHSFLLISFHCGNNLGTVNMGNQHLIER*

>peptide 2 (52 aa)
CEQKPCSLFSSHFFSLRKQLGNGKHGEPTPNRTVTRDTKLGISNGNTMLIDS*

>peptide 3 (70 aa)
MLRPSSSLPFMFSMASSIDCSVEKVTKPNPRDLPVSRSGLAVGGPCEAADEATVLHVRRRHLPSSPTEKP*

Sequence

>CNT30522537
TGCGAACAAAAACCTTGCTCACTCTTTTCTTCTCATTTCTTTTCATTGCGGAAACAACTTGGGAACGGTAAACATGGGGAACCAACACCTAATAGAACGG
TAACACGGGACACTAAACTCGGGATCTCGAACGGTAACACGATGCTAATAGATAGCTAGGATAACTTGGCTGCTGCCTGCACGGGAGGGCCCACTCCGTC
AGTTCCTCCAGTTGCCACCAGATTCGCCGCGGCTGCCGCCGTAGCCGCCACCGCCGCCGTAGCCGCCGTCGCGGCTGCGCCGCCCTGGCGACCGCCGCCG
CCGTAGCCGCCGCCGCCACCGTAGCCGCCCTGGCGACCGCCGCCGCCGTAGCCACCGCCGCCGCCGCCGCGGGACTGGGCCTGGTTGACGGTGATGTTGC
GGCCGTCGAGCTCCTTGCCGTTCATGTTCTCGATGGCTTCGAGCATCGACTGCTCAGTGGAGAAGGTGACGAAGCCGAACCCGCGGGACCTCCCAGTCTC
CCGGTCGGGACTCGCTGTCGGTGGCCCATGCGAGGCCGCCGACGAAGCAACGGTACTCCACGTCCGCCGCCGCCATCTCCCTTCTTCTCCCACTGAAAAA
CCCTAAAGCCGAAGACTTGGTAAGAGGGGGAGGAGTAGCCAACCCACCTCTGAGAGAGCACGGG