Detailed information on CNT30233604


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 5e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30397679Brassica oleraceaTriticum turgidum9.8923.3886.1565forward
CNT3082092Brassica oleraceaBrassica juncea77.1796.3994.08507forward
CNT30608086Brassica oleraceaGossypium raimondii32.7254.9982.79215forward
CNT30368762Brassica oleraceaSorghum bicolor17.6622.9782.76116forward
CNT30583519Brassica oleraceaEchinochloa crusgalli15.8340.6282.69104forward
CNT30725175Brassica oleraceaLupinus angustifolius33.0328.8282.49217forward

Expression of CNT30233604

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MIISVELEAGQDIVVDGIRQMIKKVLQNPSKPSREQRVCKGLPSSCMSLQVESHRFGTREEQCLQESDRPFLESQVQ*

>peptide 2 (40 aa)
MAIISYKRRICLHRVLQHKETDGTKRNKQDFRIQENGKPT*

>peptide 3 (36 aa)
MKPPVPSGSERPSGSNPKSPGKLQNHNNSPVKNRSL*

>peptide 4 (32 aa)
KYQPLILEVVLYGHYFLQKTNMFTQGVTTQRN*

Sequence

>CNT30233604
CTAAATACCAACCATTAATCCTAGAAGTTGTTCTTTATGGCCATTATTTCTTACAAAAGACGAATATGTTTACACAGGGTGTTACAACACAAAGAAACTG
ATGGTACCAAGAGAAACAAACAAGATTTTAGGATACAAGAGAATGGGAAACCAACATAAAACACCATGAGATGAATACGATATGATCATCTCAGTGGAAC
TTGAGGCTGGTCAAGACATTGTTGTTGACGGGATCCGCCAAATGATCAAGAAGGTTCTGCAAAACCCATCAAAGCCATCTCGAGAACAAAGAGTGTGTAA
GGGTCTGCCCAGTAGCTGTATGTCCCTGCAGGTGGAATCACACCGGTTTGGAACCAGGGAAGAGCAGTGTCTGCAGGAATCAGACCGGCCTTTCCTAGAA
TCTCAGGTGCAATAGCTCCAGCTGCACCCAACATAGCGAACCTCCCGTTGATGATCTCTCCGTAGGCCAGCCATCTCGGCTCGATGAAGCCTCCAGTACC
CTCTGGGTCTGAAAGACCAAGCGGATCGAATCCAAAGTCGCCAGGTAAGCTTCAGAATCACAACAACTCTCCAGTTAAGAATCGTTCTCTATAAACTCTA
CCCGTCTTGAAGCTTTAAAAAAATCAAATATTTGGAATTACCTGCCATCCAAGTAAG