Detailed information on CNT30603625


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 8e-137

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532296Oryza punctataEucalyptus grandis65.8358.7184.01863forward
CNT30279021Oryza punctataChenopodium quinoa64.2364.5782.78842forward
CNT30379426Oryza punctataManihot esculenta69.1878.3282.91907forward
CNT30526024Oryza punctataPhaseolus vulgaris68.567.8883.52898forward
CNT30629220Oryza punctataVigna unguiculata67.8182.3182.34889forward
CNT30709517Oryza punctataGlycine max56.980.383.65746forward
CNT30156153Oryza punctataPistacia vera65.8374.9183.31863forward
CNT3086353Oryza punctataVigna radiata68.0441.6281.84892forward
CNT30238962Oryza punctataBrassica oleracea66.5145.1182.45872forward
CNT3073617Oryza punctataBrassica juncea66.6725.8782.61874forward
CNT30460578Oryza punctataSaccharum spontaneum68.544.8886.53898forward
CNT3066849Oryza punctataLeersia perrieri71.3269.9989.2935forward
CNT30652253Oryza punctataRosa chinensis67.5168.1884.63885forward
CNT30364222Oryza punctataSorghum bicolor67.4381.6387.1884forward
CNT30572920Oryza punctataVitis vinifera56.2976.0883.2738forward
CNT3024139Oryza punctataPopulus trichocarpa67.7382.6884.57888forward
CNT30326890Oryza punctataAsparagus officinalis69.4973.8283.75911forward
CNT30330418Oryza punctataDioscorea rotundata65.8386.1383.43863forward
CNT30595410Oryza punctataEragrostis curvula69.1866.586.11907forward
CNT30111771Oryza punctataFicus carica61.9465.1782.88812forward

Expression of CNT30603625

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MSLCWSGGIPSLSWILALTLSMVSELSTSRVIVLPVKVLTKIC

>peptide 2 (76 aa)
FRIRDVKRTPKLLLGMQTILFQNRKPRPEMLECNQFTVHKPGKEVTPPSWASKVTQNHKTTNQAGMICLITDPRTS*

>peptide 3 (94 aa)
MKGRLLLNVVIGQCAPILQLLPSKDEPLLVRWDALLVLDFCLDIVDGVRALHFQSYGLASQSLHKDLHPSSEAEDQVKSRLLLDVVVSQCASIL*

>peptide 4 (52 aa)
MSLCWSGGMPSLSWIFALTLSMVSELSTSRVMVLPVRVFTKICIPPRRRRTK*

>peptide 5 (52 aa)
MSLCWSGGMPSLSWILALTLSMVSELSTSSVIVFPVRVLTKICIPPRRRRTK*

Sequence

>CNT30603625
CTTTAGAATAAGAGACGTAAAAAGGACTCCAAAGTTACTATTAGGTATGCAGACTATCCTTTTTCAGAATAGAAAACCCAGACCAGAGATGCTGGAATGT
AACCAGTTTACAGTTCACAAGCCCGGAAAAGAAGTAACGCCACCTTCTTGGGCATCGAAAGTAACACAAAACCACAAAACCACAAATCAAGCTGGAATGA
TCTGTTTGATCACGGATCCACGGACCAGTTAAGAATAACGAGCATAAAAGCAGACTAGTTATAGAAGAAACCAGTACTATATAGGAATAACATAAGTTCA
TGATGGAACATTGAACGATACGAGGCGCAACAACACAGCGGGTGTGCCATCACGCGTCGGCATTGCATTCAAATACGCATCAAACTGTTTAGTCAAGACG
ACCACCGCGGAGGCGCAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCTGCCAAGGTACGCCCATCCTCTAGCTGCTTCCCAGCAAAGATG
AGCCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTGTCGATGGTATCAGAGCTCTCGACTTCAAGTGTGATAGTCTTTC
CAGTTAGGGTCTTGACAAAGATCTGCATCCCTCCACGAAGACGGAGGACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCCAATGTGCGCCC
ATCCTCCAGTTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATTTTTGCCTTGACATTGTCGATGGTGTCAGAG
CTCTCCACTTCCAGAGTTATGGTCTTGCCAGTCAGAGTCTTCACAAAGATCTGCATCCCTCCTCGGAGGCGGAGGACCAAGTGAAGAGTAGACTCCTTCT
GGATGTTGTAGTCAGCCAATGTGCGTCCATCCTCTAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCAGGTGGGATACCCTCCTTGTCCTGGATCTT
GGCCTTGACATTGTCAATTGTATCAGAGCTCTCAACCTCAACTGTGATCGTCTTTCCTGTAAGGGTCTTCACAAAGATCTGCATCCCACCCCTCAAGCGA
AGAACAAGGTGGAGGGTGGATTCCTTTTGAATGTTATAGTCAGCGAGTGTCCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCTG
GGGGGATACCCTCCTTGTCCTGGATCTTGGCTTTAACATTGTCAATGGTGTCGGAACTCTCTACATCAAGAGTGATAGTCTTGCCAGTCAAAGTCTTGAC
AAAGATCTGCA