« Back to Chenopodium quinoa search


Detailed information on CNT30279021


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG85|UBI1P_NICSY, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381284Chenopodium quinoaManihot esculenta51.4670.9385.39671forward
CNT30629220Chenopodium quinoaVigna unguiculata71.2486.0283.42929forward
CNT30637282Chenopodium quinoaCapsicum annuum99.3165.7783.941295forward
CNT3086353Chenopodium quinoaVigna radiata81.8349.7982.011067forward
CNT30311152Chenopodium quinoaCamelina sativa97.1678.5582.081267forward
CNT3079055Chenopodium quinoaBrassica juncea73.1688.0982.08954forward
CNT30460578Chenopodium quinoaSaccharum spontaneum84.7455.2282.081105forward
CNT30716337Chenopodium quinoaMalus domestica golden77.381.3684.521008forward
CNT30704854Chenopodium quinoaPrunus avium99.4672.7483.421297forward
CNT30326890Chenopodium quinoaAsparagus officinalis68.171.9682.66888forward
CNT30120072Chenopodium quinoaCitrus clementina58.966.0485.03768forward
CNT30603625Chenopodium quinoaOryza punctata64.5764.2382.78842forward
CNT3050995Chenopodium quinoaCucumis sativus74.9287.7882.8977forward

Expression of CNT30279021

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVSELSTSKVIVFPVKVLTKICIPPLKRSTRWRVDSF*

>peptide 2 (34 aa)
APVLQLLTSKNQPLLVRRNSFLVLYLSLDIIDSV*

>peptide 3 (40 aa)
MVSELSTSRVMVFPVRVLTKICMPPLRRRTRWRVDSFWML*

>peptide 4 (40 aa)
MVSELSTSRVIVFPVRVFTKICMPPLRRRTRWRVDSFWML*

>peptide 5 (62 aa)
RPSSNCLPAKINLCWSGGIPSLSCILVLTLSIVSELSTSKVMVFPVKVLTNICIPPLKRSTK*

Sequence

>CNT30279021
GCGCCCGTCCTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGTATCTTAGTCTTGACATTATCGATAGTG
TCTGAGCTCTCGACCTCCAAGGTGATGGTTTTCCCAGTCAAGGTCTTAACAAATATTTGCATTCCTCCTCTTAAACGAAGCACCAAGTGAAGTGTAGACT
CCTTTTGGATGTTGTAGTCTGCAAGGGTCCTCCCATCCTCGAGCTGCTTCCCTGCAAAGATCAATCTTTGCTGATCTGGGGGAATGCCCTCCTTATCCTG
AATCTTAGCCTTGACATTGTCGATGGTGTCTGAGCTCTCAACCTCCAAAGTGATAGTTTTCCCAGTCAAAGTCTTGACGAAAATTTGCATTCCACCTCTT
AAACGGAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTT
GGTCTGGGGGAATGCCTTCCTTGTCTTGAATTTTGGTTTTGACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGGGTGATAGTCTTCCCAGTGAGGGT
CTTCACAAAAATCTGCATGCCACCTCTAAGACGGAGAACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCAAGAGTGCGGCCATCTTCAAGT
TGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATTTTGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCAACCT
CAAGGGTGATGGTCTTCCCAGTGAGGGTCTTAACAAAAATCTGCATGCCACCTCTAAGACGGAGAACCAGGTGGAGGGTCGACTCTTTCTGGATGTTGTA
ATCAGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCGGCAAAGATTAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGGATTTTGGTTTTAACA
TTGTCAATCGTATCAGAGCTTTCAACCTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTAACAAAGATCTGCATGCCACCTCTTAGACGAAGAACAAGGT
GGAGGGTCGACTCCTTCTGGATATTGTAGTCAGCGAGCGTTCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGAATTCC
CTCCTTATCTTGAATCTTCGTCTTAACATTGTCGATGGTGTCAGAACTCTCAACCTCGAGAGTTATGGTTTTTCCGGTAAGAGTCTTAACGAAGATTTGC
ATCT