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Detailed information on CNT30330418


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-149

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641434Dioscorea rotundataNymphaea colorata68.0664.484.75682forward
CNT30532296Dioscorea rotundataEucalyptus grandis84.0357.2883.61842forward
CNT30727227Dioscorea rotundataCorchorus capsularis68.2659.5383.48684forward
CNT3097364Dioscorea rotundataSolanum tuberosum84.9374.9882.02851forward
CNT30568725Dioscorea rotundataActinidia chinensis87.9275.9582.18881forward
CNT3066849Dioscorea rotundataLeersia perrieri85.5364.1583.08857forward
CNT30364985Dioscorea rotundataSorghum bicolor87.9285.8782.86881forward
CNT30326890Dioscorea rotundataAsparagus officinalis88.5271.8883.54887forward
CNT30603625Dioscorea rotundataOryza punctata86.1365.8383.43863forward
CNT30174617Dioscorea rotundataVigna angularis87.8282.1784.2880forward
CNT30726539Dioscorea rotundataLupinus angustifolius68.1671.8283.75683forward
CNT3066527Dioscorea rotundataSelaginella moellendorffii80.0496.0582.79802forward

Expression of CNT30330418

Peptides detected in this lncRNA

>peptide 1 (33 aa)
KKSATIPSLYLEHKHKRTKTSSNKPQHYSYKAR*

>peptide 2 (52 aa)
MSLCWSGGMPSLSWIFVFTLSMVSELSTSRVMVLPVRVLTKICMPPRRRRTR*

>peptide 3 (72 aa)
QRNQQRYQVYIWNTNIKEPKLVATSHNIIHIKRDNTFSKHHHEDEEQDEGWTPSGYYSQPVFFHPPAACLQR*

>peptide 4 (53 aa)
MPSLSWILVFTLSIVSELSTSRVMVFPVSVLTKICMPPRKRRTRWRVDSFWML*

>peptide 5 (71 aa)
MKGGLLLDIIVSQCSSILQLLACKDEPLLVWRNAFLVLDLCLHIIYGVRALHFESDGFASKSLNKDLHASS*

>peptide 6 (30 aa)
MVFPVSVLTKICMPPRRRRTRWRVDSFWML*

Sequence

>CNT30330418
CAAAGAAATCAGCAACGATACCAAGTCTATATTTGGAACACAAACATAAAAGAACCAAAACTAGTAGCAACAAGCCACAACATTATTCATATAAAGCGAG
ATAATACTTTCAGCAAGCACCACCACGAAGACGAAGAACAAGATGAAGGGTGGACTCCTTCTGGATATTATAGTCAGCCAGTGTTCTTCCATCCTCCAGC
TGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTGGATCTTTGTCTTCACATTATCTATGGTGTCCGAGCTCTCCACTT
CGAGAGTGATGGTTTTGCCAGTAAGAGTCTTAACAAAGATCTGCATGCCTCCTCGTAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTA
GTCTGCCAAGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGGATTTTAGTCTTCACA
TTGTCTATTGTGTCAGAGCTCTCAACCTCAAGGGTGATGGTCTTCCCAGTTAGCGTCTTGACAAAGATCTGCATGCCTCCACGCAAGCGGAGAACCAGGT
GGAGAGTCGATTCCTTTTGGATGTTGTAGTCTGCCAAGGTTCGGCCATCTTCAAGCTGTTTACCCGCAAAGATAAGCCTCTGCTGATCAGGGGGAATCCC
TTCCTTGTCTTGGATCTTTGTCTTGACATTGTCAATTGTGTCTGAGCTCTCAACCTCAAGGGTGATGGTCTTCCCAGTTAGTGTCTTAACAAAGATCTGC
ATGCCTCCACGTAGGCGGAGAACCAGGTGGAGGGTTGATTCCTTTTGGATGTTGTAATCAGCCAAAGTTCGGCCATCCTCAAGTTGCTTACCGGCAAAGA
TTAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCTTGGATCTTTGTCTTGACATTGTCAATAGTGTCTGAGCTCTCTACCTCAAGAGTGATGGTCTT
TC