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Detailed information on CNT30379426


BLAST search results

BLAST vs Swiss-Prot:
sp|Q58G87|UBQ3_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532219Manihot esculentaEucalyptus grandis74.4451.2583.87862forward
CNT30546269Manihot esculentaIpomoea triloba71.4292.0982.59827forward
CNT30512879Manihot esculentaJuglans regia69.9584.2984.07810forward
CNT30701438Manihot esculentaQuercus lobata78.1562.0383.65905forward
CNT30526024Manihot esculentaPhaseolus vulgaris76.3466.8283.6884forward
CNT30629220Manihot esculentaVigna unguiculata73.2378.5283.84848forward
CNT30709517Manihot esculentaGlycine max70.6488.0584.6818forward
CNT3044330Manihot esculentaPrunus dulcis78.3274.1685.01907forward
CNT30156153Manihot esculentaPistacia vera78.7679.1785.42912forward
CNT30635990Manihot esculentaCapsicum annuum78.543.8583.83909forward
CNT3094992Manihot esculentaSolanum tuberosum74.8774.4885.47867forward
CNT30562217Manihot esculentaActinidia chinensis57.1765.7486.56662forward
CNT30511508Manihot esculentaSolanum lycopersicum75.366.6782.68872forward
CNT30172216Manihot esculentaTrifolium pratense76.8652.2383.03890forward
CNT30145458Manihot esculentaMedicago truncatula77.8955.1782.37902forward
CNT3061767Manihot esculentaArabidopsis lyrata78.1555.4282.43905forward
CNT30605389Manihot esculentaGossypium raimondii78.8492.683.57913forward
CNT3066849Manihot esculentaLeersia perrieri77.9867.5982.61903forward
CNT30652253Manihot esculentaRosa chinensis77.4669.1184.28897forward
CNT30625880Manihot esculentaDaucus carota78.3275.0884.12907forward
CNT30480747Manihot esculentaArabidopsis halleri78.3278.1983.24907forward
CNT30364985Manihot esculentaSorghum bicolor73.7583.2483.26854forward
CNT30423866Manihot esculentaPapaver somniferum78.3270.9183.02907forward
CNT30704857Manihot esculentaPrunus avium76.9456.4385.52891forward
CNT30642981Manihot esculentaCannabis sativa78.1580.6683.31905forward
CNT3032754Manihot esculentaTheobroma cacao77.268.1483.45894forward
CNT3026527Manihot esculentaPopulus trichocarpa77.9892.4384.5903forward
CNT30321313Manihot esculentaAsparagus officinalis74.5365.8383.2863forward
CNT30120072Manihot esculentaCitrus clementina69.9569.6584.94810forward
CNT30330420Manihot esculentaDioscorea rotundata78.3253.6182.47907forward
CNT30603625Manihot esculentaOryza punctata78.3269.1882.91907forward
CNT30111662Manihot esculentaFicus carica74.7864.0583.37866forward
CNT30334105Manihot esculentaCynara cardunculus76.8637.7482.13890forward
CNT30726149Manihot esculentaLupinus angustifolius76.3446.4383.6884forward
CNT30114931Manihot esculentaEutrema salsugineum74.8778.1882.93867forward

Expression of CNT30379426

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MPSLSWILAFTLSIVSELSTSKVMVFPVRVFTKICMPPRRRSTKWRVDSF*

>peptide 2 (50 aa)
MPSLSWIFALTLSIVSELSTSRVIVLPVRVFTNICMPPRRRSTKWRVDSF*

>peptide 3 (30 aa)
QIHPRKHETRNRMLFRQTKPTLLPLKEKEY*

Sequence

>CNT30379426
GTCAGATACATCCCAGAAAACATGAAACAAGAAACAGGATGTTATTTAGGCAAACTAAGCCAACTTTATTGCCATTAAAGGAAAAAGAGTACTAATGACC
TTATACTGGCCATCTTTAACAGGCTTTAGACAAGTACTTATAACCATTCCAACATAACCAAGTATTTAGGACTTACTACTTATTTAAAAGCCATTAAGGC
ATTACCAGTAGCTAGTAAAAACAAACTAGGACACAACCACACAACTCAGATACCACCACGAAGGCGAAGGACAAGGTGCAAGGTAGACTCCTTCTGGATA
TTGTAATCAGCAAGTGTCCTCCCATCCTCGAGCTGTTTTCCAGCAAATATCAATCTCTGCTGATCTGGTGGGATGCCTTCCTTGTCCTGGATTTTAGCCT
TCACATTGTCAATAGTATCTGAACTCTCTACCTCCAAGGTAATGGTCTTCCCGGTAAGGGTCTTCACAAAGATCTGCATGCCTCCACGAAGGCGAAGCAC
CAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGG
ATGCCCTCCTTGTCTTGGATCTTTGCCTTGACATTGTCAATAGTATCAGAACTTTCAACCTCCAGGGTAATTGTTTTACCCGTTAGGGTCTTCACAAATA
TCTGCATGCCACCACGAAGGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTACGGCCATCCTCCAGCTGCTTACCAGC
AAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATAGTGTCGGAGCTTTCCACTTCCAATGTGATT
GTCTTGCCAGTGAGGGTCTTCACAAAGATTTGCATGCCACCACGCAGGCGGAGCACCAAATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGCAAGGG
TGCGGCCATCCTCTAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGTGGAATACCTTCTTTGTCCTGGATCTTAGCCTTTACATTGTCAATGGT
GTCTGAACTTTCCACCTCCAAAGTGATTGTCTTGCCGGTGAGAGTTTTTACAAAGATC