Detailed information on CNT30572920


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 2e-177

BLAST vs NONCODE:
NONTPRT002153, E-value = 2e-96

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532914Vitis viniferaEucalyptus grandis79.0756.1582.4767forward
CNT30515731Vitis viniferaJuglans regia78.8789.2682.09765forward
CNT30401729Vitis viniferaBeta vulgaris78.6655.6982.04763forward
CNT30525116Vitis viniferaPhaseolus vulgaris78.8751.3481.44765forward
CNT30624534Vitis viniferaDaucus carota79.1843.1583.07768forward
CNT30120117Vitis viniferaCitrus clementina60.2186.0183.05584forward
CNT30330410Vitis viniferaDioscorea rotundata70.9377.5684.45688forward
CNT30595409Vitis viniferaEragrostis curvula63.6167.9585.41617forward
CNT30603625Vitis viniferaOryza punctata76.0856.2983.2738forward

Expression of CNT30572920

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSSVIVLPVRVFTNICIPPRRRRTR*

>peptide 2 (58 aa)
MSLCWSGGIPSLSWILAFTLSMVSELSTSRVIVFPVRVFTKICMPPLKRRTKCRVDSF*

>peptide 3 (51 aa)
MHKPTPSIERDPTIPQCTRQNKYCSRSPSNQLSLTICNQHHHHGVEEQDEV*

Sequence

>CNT30572920
CTATAAAGCAAACCAAATCCAAATACAAATTATAAAGTAAATCCAAGTCCAAATCCACATATTGTTTACCATTGAACATCAATGCATAAACCAACGCCAA
GCATTGAAAGGGACCCTACCATTCCACAATGCACAAGACAGAATAAATACTGCTCCAGATCCCCATCAAACCAGCTATCCCTCACCATCTGCAACCAACA
TCACCACCACGGAGTCGAAGAACAAGATGAAGTGTAGATTCCTTCTGAATATTGTAATCTGCCAAGGTCCGCCCATCCTCTAGCTGCTTTCCAGCAAATA
TGAGCCTCTGCTGATCTGGAGGGATACCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCTATGGTGTCAGAGCTCTCCACCTCAAGTGTGATAGTTTT
ACCTGTCAGGGTCTTCACAAATATCTGCATACCTCCACGAAGGCGAAGAACAAGGTGAAGGGTTGATTCCTTCTGTATATTGTAGTCAGCCAAAGTTCGA
CCATCTTCTAGCTGCTTACCAGCAAAGATTAGCCTCTGCTGGTCGGGTGGAATACCTTCCTTGTCCTGGATTTTTGCTTTCACATTGTCGATAGTGTCTG
AACTCTCAACTTCAAGGGTGATAGTTTTACCAGTAAGGGTCTTCACAAATATTTGCATGCCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGACTCCTT
CTGGATGTTGTAGTCCGCCAATGTCCGACCATCTTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATT
TTAGCTTTCACATTATCGATGGTGTCTGAACTCTCAACTTCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCATGCCGCCTCTTAAAC
GGAGAACCAAGTGTAGGGTGGACTCTTTTTGAATGTTATAATCGGCCAAAGTCCTACCATCCTCGAGCTG