« Back to Leersia perrieri search


Detailed information on CNT3066849


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG84|UBI4P_NICSY, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 4e-142

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641270Leersia perrieriNymphaea colorata85.6357.2981.381144forward
CNT30532219Leersia perrieriEucalyptus grandis79.4263.08821061forward
CNT30279009Leersia perrieriChenopodium quinoa83.4672.9781.431115forward
CNT30379426Leersia perrieriManihot esculenta67.5977.9882.61903forward
CNT30526024Leersia perrieriPhaseolus vulgaris68.2668.9383.66912forward
CNT30629220Leersia perrieriVigna unguiculata66.3982.1382.75887forward
CNT30200107Leersia perrieriPisum sativum62.8794.8183.33840forward
CNT30709517Leersia perrieriGlycine max63.4791.2883.49848forward
CNT30156103Leersia perrieriPistacia vera68.4977.2882.51915forward
CNT30636316Leersia perrieriCapsicum annuum85.6355.1981.211144forward
CNT3086353Leersia perrieriVigna radiata80.2450.0281.621072forward
CNT30538027Leersia perrieriBrassica napus83.4658.8180.991115forward
CNT30233220Leersia perrieriBrassica oleracea56.7497.8183.11758forward
CNT30147198Leersia perrieriMedicago truncatula85.480.8681.161141forward
CNT30312715Leersia perrieriCamelina sativa66.2488.8683.73885forward
CNT3061767Leersia perrieriArabidopsis lyrata68.1955.7982911forward
CNT3073617Leersia perrieriBrassica juncea85.5533.8482.411143forward
CNT30260967Leersia perrieriBrassica rapa68.0474.9482.62909forward
CNT30460578Leersia perrieriSaccharum spontaneum85.4857.0785.381142forward
CNT30217449Leersia perrieriKalanchoe fedtschenkoi85.5575.7581.891143forward
CNT30626005Leersia perrieriDaucus carota85.5534.581.81143forward
CNT30480747Leersia perrieriArabidopsis halleri68.1978.5382911forward
CNT30364222Leersia perrieriSorghum bicolor66.1781.6385.86884forward
CNT30418420Leersia perrieriPapaver somniferum85.6366.5580.861144forward
CNT30706353Leersia perrieriPrunus avium85.2564.5382.881139forward
CNT30642231Leersia perrieriCannabis sativa68.1185.8582.53910forward
CNT3028051Leersia perrieriTheobroma cacao83.2391.2282.011112forward
CNT3024139Leersia perrieriPopulus trichocarpa63.9279.5283.26854forward
CNT30326890Leersia perrieriAsparagus officinalis68.3473.9983.35913forward
CNT30120444Leersia perrieriCitrus clementina85.3371.4780.611140forward
CNT30330418Leersia perrieriDioscorea rotundata64.1585.5383.08857forward
CNT30595410Leersia perrieriEragrostis curvula84.5882.8484.161130forward
CNT30603625Leersia perrieriOryza punctata69.9971.3289.2935forward
CNT30726149Leersia perrieriLupinus angustifolius68.2647.981.8912forward

Expression of CNT3066849

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MSLCWSGGMPSLSWILALTLSMVSELSTSSVIVFLVRVLTKICIPPRRRRTK*

>peptide 2 (52 aa)
MSLCWSGGMPSLSWIFALTLSIVSELSTSRVMVLPVRVFTKICIPPLRRRTK*

>peptide 3 (29 aa)
MCARLPAVSQQILASADQERSPPCPGSWP*

>peptide 4 (54 aa)
EDSCITSIQAKLIYKPSTRGIEITKCLKWNIEQYWMQLQRRRNTASSRAIMHIR*

>peptide 5 (94 aa)
MKSRLLLDVVVSQRASIFKLLSSKDEPLLIRRDTLLVLDLGLDVVNCIRAFNLKCDRLSCKGLHKDLHPTPQAKYKVEGGFLLNIVVSECSAIL*

Sequence

>CNT3066849
GAGGATTCATGCATAACGAGCATACAAGCAAAGCTAATATATAAGCCAAGTACTAGAGGGATAGAAATAACAAAATGTTTAAAATGGAACATAGAGCAGT
ACTGGATGCAACTACAGCGTCGTCGCAACACAGCAAGTAGCCGTGCAATTATGCACATCAGATAAACATCAAACTGCTTTGGTCGAGACGACCACCACGG
AGGCGCAGGACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCTAAGGTACGCCCATCCTCCAGTTGCTTCCCAGCAAAGATGAGCCTTTGTT
GGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTATCTGAACTCTCGACTTCAAGTGTGATAGTCTTTCTAGTCAGGGT
CTTGACAAAGATCTGCATCCCTCCACGAAGGCGGAGGACCAAGTGAAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAATGTGCGCCCGTCCTCCAGC
TGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTTGCCTTAACATTGTCAATTGTGTCGGAGCTCTCCACCT
CCAGAGTTATGGTCTTGCCGGTAAGAGTCTTCACAAAGATCTGCATACCTCCTCTGAGGCGGAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTA
ATCAGCCAATGTGCGCCCGTCTTCCAGCTGTTTCCCAGCAAATATTAGCCTCTGCTGATCAGGAGAGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACA
TTGTCGATTGTATCAGAGCTCTCTACCTCAAGAGTGATAGTCTTTCCTGTAAGGGTCTTCACAAAGATTTGCATCCCTCCACGGAGACGCAGAACCAAAT
GAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAACGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGATCAGGAGGGATACC
CTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATTGTATCAGAGCTTTCAACCTCAAGTGTGATCGTCTTTCCTGTAAGGGTCTTCACAAAGATCTGC
ATCCCACCCCTCAAGCGAAGTACAAGGTGGAGGGTGGATTCCTTTTGAATATTGTAGTCAGCGAGTGTTCGGCCATCCTCTAGTTGCTTGCCAGCAAAAA
TCAGCCTCTGTTGGTCTGGGGGGATGCCCTCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAATCTCAACCTCAAGAGTGATGGTCTTG
CCGGTCAAAGTCTTAACAAAGATCTGCATCTGCGCC