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Detailed information on CNT3024139


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316435Populus trichocarpaCorylus avellana69.7497.7883.58749forward
CNT30279009Populus trichocarpaChenopodium quinoa81.6657.483.81877forward
CNT30629001Populus trichocarpaVigna unguiculata83.2473.0481.99894forward
CNT30636081Populus trichocarpaCapsicum annuum82.3147.9184.5884forward
CNT3089455Populus trichocarpaVigna radiata80.0770.7282.91860forward
CNT30147198Populus trichocarpaMedicago truncatula80.8261.5282.95868forward
CNT30605389Populus trichocarpaGossypium raimondii83.0590.4782.85892forward
CNT3066849Populus trichocarpaLeersia perrieri79.5263.9283.26854forward
CNT30622898Populus trichocarpaDaucus carota78.9648.6284.2848forward
CNT30364222Populus trichocarpaSorghum bicolor82.7782.0983.01889forward
CNT30706353Populus trichocarpaPrunus avium82.7750.3785.49889forward
CNT3032754Populus trichocarpaTheobroma cacao81.4766.6983.31875forward
CNT30321313Populus trichocarpaAsparagus officinalis81.0166.3683.79870forward
CNT30120072Populus trichocarpaCitrus clementina75.0569.385.11806forward
CNT30603625Populus trichocarpaOryza punctata82.6867.7384.57888forward
CNT30111662Populus trichocarpaFicus carica82.0365.1683.2881forward
CNT30334105Populus trichocarpaCynara cardunculus77.8435.4583.37836forward

Expression of CNT3024139

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MPSLSWIFALTLSMVSELSTSKVMVFPVKVFTKICIPPRRRSTKWRVDSFWML*

>peptide 2 (48 aa)
MEGGLLLDVIISKGAAILELLSGKDQPLLVRRDTFLVLDLGLDIVNCV*

>peptide 3 (32 aa)
CIKKRKFIAVNQRRVYDFLKPDRNHNQTAYLK*

Sequence

>CNT3024139
ATGTATTAAAAAGAGGAAATTTATTGCAGTAAATCAAAGACGAGTTTATGACTTCCTTAAACCAGACAGAAACCATAACCAAACAGCATACTTAAAATAG
TTCCGAGAACATTATAGATTCCCTTTAACAATTGCCAGTTACCACCAACAGAACCACAAATACTAGCATCATCACTGTTTAGAAACCACCACGGAGGCGA
AGCACGAGGTGCAGAGTGGACTCCTTCTGGATATTGTAATCAGCCAAGGTCCTTCCATCTTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTG
GTGGAATCCCCTCCTTGTCCTGGATTTTGGCCTTAACATTGTCAATTGTGTCCGAGCTCTCAACTTCCAAGGTGATGGTCTTCCCGGTGAGTGTCTTGAC
AAAGATCTGCATACCTCCACGCAAGCGCAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTGCGCCCATCCTCTAGCTGCTTG
CCAGCAAAGATAAGCCTCTGTTGATCTGGGGGGATGCCCTCTTTGTCCTGGATTTTTGCCTTGACATTATCGATGGTGTCAGAGCTCTCTACCTCCAAGG
TAATGGTCTTCCCAGTCAAAGTCTTCACGAAAATCTGCATACCACCTCGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAATCAGC
AAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCA
ATTGTGTCTGAGCTCTCAACTTCCAAGGTGATTGTCTTGCCAGTGAGGGTCTTAACAAAAATCTGCATACCACCTCTCAAACGTAGAACCAAGTGGAGAG
TGGATTCCTTTTGGATGTTATAATCAGCAAGGGTTCGTCCATCCTCAAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGGGGGATCCCTTCCTT
ATCCTGGATCTTGGCTTTCACATTATCAATAGTATCCGAGCTTTCCACCTCAAGGGTGATGGTCTTGCCAGTGA