Detailed information on CNT30364222


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 5e-156

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3045767Sorghum bicolorPrunus dulcis62.7946.3285680forward
CNT30310997Sorghum bicolorCamelina sativa79.9675.0483.37866forward
CNT3066849Sorghum bicolorLeersia perrieri81.6366.1785.86884forward
CNT3024139Sorghum bicolorPopulus trichocarpa82.0982.7783.01889forward
CNT30603625Sorghum bicolorOryza punctata81.6367.4387.1884forward

Expression of CNT30364222

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MKSGFLLDVVICQGAPVLKLLPSEDEPLLIWRNPFLVLDLGLHIVNGVRALHFQRDCLASQCLDKDLHAPPKPQDKMKSGFLLDVVVS*

>peptide 2 (35 aa)
MSLCWSGGMPSLSWILALTLSMVSELSTSRVMVLPV

>peptide 3 (40 aa)
MVSELSTSSVIVLPVRVFTNICMPPLKRKTRWRVDSFWIL*

>peptide 4 (53 aa)
MTKHLVELDIESLHDEALNRTGYVSNHRILIASQQDIFLLPQLTRPPRRRRTR*

>peptide 5 (61 aa)
MSRCWSGGMPSLSWIFALTLSIVSELSTSSVIVFPVSVFTKICIPPRRRKTRCRVDSFWIL*

>peptide 6 (31 aa)
MVSELSTSNVIVLPVSVLTKICMPPLSRRTR*

Sequence

>CNT30364222
TACGAACGCAACAGGCTATATATAAAGTATAGCCAACAGATTATATAGAAAAGTTTACATGACGAAACACTTAGTAGAACTGGATATAGAAAGTTTACAC
GACGAAGCACTTAATAGAACTGGATACGTCTCTAACCATAGAATTTTAATAGCTTCGCAGCAGGACATATTCCTACTACCTCAGTTAACACGGCCACCAC
GGAGGCGCAGGACGAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCTGCCAAGGTGCGCCCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGCCTCTG
CTGATCTGGAGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCAGAGCTCTCCACTTCCAACGTGATTGTCTTGCCAGTCAGT
GTCTTGACAAAGATTTGCATGCCCCCCCTAAGCCGCAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGCTAAGGTGCGCCCATCCTCCA
GCTGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCAATTGTGTCAGAGCTCTCAAC
CTCAAGCGTGATAGTCTTCCCAGTAAGTGTCTTCACAAAGATCTGCATCCCACCTCGGAGGCGTAAAACCAGATGCAGGGTAGACTCCTTCTGGATATTA
TAGTCAGCCAGGGTGCGGCCATCCTCTAGCTGCTTGCCAGCAAAGATGAGTCTCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGAATCTTGGCCTTGA
CATTGTCGATGGTGTCAGAGCTCTCAACCTCCAGTGTGATTGTCTTGCCCGTAAGAGTCTTCACAAATATCTGCATGCCACCCCTCAAGCGCAAGACAAG
ATGGAGGGTAGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGGCCATCCTCTAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGGGATG
CCCTCCTTGTCTTGGATCTTGGCTTTAACATTGTCGATGGTGTCTGAACTCTCAACCTCGAGAGTGATGGTCTTGCCGGTGAG