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Detailed information on CNT30238962


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641251Brassica oleraceaNymphaea colorata47.2851.6783.04914forward
CNT30532219Brassica oleraceaEucalyptus grandis45.8452.6882.28886forward
CNT30274489Brassica oleraceaChenopodium quinoa47.0874.3582.64910forward
CNT30538027Brassica oleraceaBrassica napus52.9754.0189.261024forward
CNT30171101Brassica oleraceaTrifolium pratense47.3955.0884.5916forward
CNT30145248Brassica oleraceaMedicago truncatula45.5844.8884.11881forward
CNT30311150Brassica oleraceaCamelina sativa47.0865.9488.24910forward
CNT3061706Brassica oleraceaArabidopsis lyrata34.5172.8290.1667forward
CNT3079055Brassica oleraceaBrassica juncea50.890.6789.82982forward
CNT30460578Brassica oleraceaSaccharum spontaneum46.5144.9382.87899forward
CNT30605389Brassica oleraceaGossypium raimondii46.5191.1882.76899forward
CNT30217431Brassica oleraceaKalanchoe fedtschenkoi47.5967.9583.04920forward
CNT30652285Brassica oleraceaRosa chinensis47.4475.3583.86917forward
CNT30128346Brassica oleraceaCorymbia citriodora35.4473.7485.11685forward
CNT30622888Brassica oleraceaDaucus carota47.2853.4884.79914forward
CNT30480747Brassica oleraceaArabidopsis halleri47.879.6685.61924forward
CNT30364985Brassica oleraceaSorghum bicolor46.0486.7483.15890forward
CNT30423866Brassica oleraceaPapaver somniferum46.3570.0582.59896forward
CNT30642981Brassica oleraceaCannabis sativa47.0881.1182.09910forward
CNT3026527Brassica oleraceaPopulus trichocarpa46.5192.0282.87899forward
CNT30321313Brassica oleraceaAsparagus officinalis44.4965.683.49860forward
CNT30120507Brassica oleraceaCitrus clementina47.1383.7382.22911forward
CNT30595410Brassica oleraceaEragrostis curvula46.5165.9183.43899forward
CNT30603625Brassica oleraceaOryza punctata45.1166.5182.45872forward
CNT30174695Brassica oleraceaVigna angularis45.7384.8483.6884forward
CNT30111644Brassica oleraceaFicus carica44.9660.9883.43869forward
CNT3066362Brassica oleraceaSelaginella moellendorffii47.1892.4983.22912forward
CNT3050995Brassica oleraceaCucumis sativus47.1381.8582.88911forward

Expression of CNT30238962

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MSLCWSGGMPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICICKQENKY*

>peptide 2 (31 aa)
MKNIDTDDPIFAEANRDHLPSASTKLKEHQF*

>peptide 3 (32 aa)
MHLGYYLNLKHKGPLRSQPKGSQRKENTENRK*

>peptide 4 (40 aa)
MVSELSTSRVMVLPVKVLTKICIPPLNLRTRWRVDSFWML*

Sequence

>CNT30238962
TCGGTCTTGCTCAACTTGTCCAAGATTTTTCTTAATCCCACAGGTTTCAATTTCTTGAGTTAGTACTTAGTAGTAATCAACTAGTTAAGTTATATTTCAC
CATATGAGCAAAACACAAATCCCATTAACCATGCAAGTGCCAGCGAGTTCAAGAAAATCTTTGATTCTCTCCTATCAACAGTAAACGTATCAGAGACGAG
TCCATCGTAAATAATAGCAACGACTTGAAAGCATAGACAAAAGTTCATAATGCACTTGGGTTATTATCTAAACTTGAAACATAAAGGACCATTACGATCC
CAACCGAAAGGTTCACAACGAAAAGAAAATACGGAAAACAGAAAATGAAAAACATTGACACAGACGATCCAATTTTTGCAGAAGCAAACAGAGATCACCT
CCCAAGTGCATCAACAAAGCTCAAAGAACACCAGTTTTGACCACACAGATCAACAAGCTTAGAAGCTTCCACCACGAAGACGCAGCACAAGGTGAAGAGT
CGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCTACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTG
TCCTGAATCTTAGCCTTGACATTGTCTATCGTGTCTGAGCTCTCAACTTCCAAGGTTATAGTCTTGCCTGTCAAAGTCTTCACAAATATTTGCATTCCAC
CACGGAGACGCAACACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAATCCGCAAGCGTACGACCATCCTCGAGCTGTTTCCCAGCGAAGATGAGTCT
CTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCAATCGTGTCAGAGCTCTCCACCTCCAAAGTTATTGTTTTGCCGGTG
AGGGTCTTGACAAAAATCTGCATACCACCTCTTAGACGAAGCACAAGGTGGAGAGTCGACTCTTTCTGGATATTGTAGTCAGCGAGTGTGCGTCCATCCT
CCAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTGTCTGAGCTCTC
AACCTCGAGGGTGATGGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCATACCACCTCTCAACCTGAGAACCAGATGGAGAGTTGACTCCTTCTGGATG
TTGTAGTCAGCGAGAGTCCTTCCATCTTCAAGCTGCTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCT
TGACGTTGTCAATGGTGTCAGAGCTCTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGAGTTTTCACGAAAATTTGCATCTGCAAACAAGAAAACAAGTA
TTAAACACTCAGCCAAGATTAGAATCGTTCAGCTACCGTATTAGATCATGCAATTCACGGAAGAAACTACAGATTGAGATCATCAACGTTCATAATAATA
ATAAGCTAGATTGACGACACCAACAAAGAATTTTACAATTCGATTAACCAAGGATTCAATAAATCTAAGCAACACAGGATACGAGACGAAAGATACATAA
GCGAAAAAAAAAAAAAAAAAAAAAAAAGAGAGTTAAAGAGAGGATCGAAAGAGCGATTTAGGTTTCTGAGAGAGATTTGATGTTGAATCTGTGAGAGAGA
GACGAAGGTGATTCTGATCCGTAGAGAAGGTTTTCTTATATAGCCGAGTTTTTGTTGAAGATGTTAAATATCAATTTGAGAAAATCTCTTGATATTAAAA
TTAACATTTAAAGTCCTTTTACACGTGTCTATGTTAACAACCGTTCGTTTTACAAAGACCGACTCAACTAGAAACATCCATTGGTGGTTGGATTAGGTCA
TTGATGACTTATGCACCCACTGGCCAAACTCAA