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Detailed information on CNT30460578


BLAST search results

BLAST vs Swiss-Prot:
sp|P42739|UBIQP_ACEPE, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 7e-160

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641270Saccharum spontaneumNymphaea colorata57.1757.2982.691144forward
CNT30532219Saccharum spontaneumEucalyptus grandis54.3764.6883.181088forward
CNT30279021Saccharum spontaneumChenopodium quinoa55.2284.7482.081105forward
CNT30637410Saccharum spontaneumCapsicum annuum56.9265.4681.911139forward
CNT3097291Saccharum spontaneumSolanum tuberosum53.4269.4282.041069forward
CNT30562215Saccharum spontaneumActinidia chinensis32.9868.0485660forward
CNT3086353Saccharum spontaneumVigna radiata52.9749.4681.61060forward
CNT30538027Saccharum spontaneumBrassica napus55.7258.8182.61115forward
CNT30238962Saccharum spontaneumBrassica oleracea44.9346.5182.87899forward
CNT30511508Saccharum spontaneumSolanum lycopersicum55.9785.6381.161120forward
CNT30145248Saccharum spontaneumMedicago truncatula53.1754.282.331064forward
CNT30311152Saccharum spontaneumCamelina sativa55.5768.9482.641112forward
CNT30262720Saccharum spontaneumBrassica rapa44.4871.4982.7890forward
CNT30217449Saccharum spontaneumKalanchoe fedtschenkoi53.0770.3882.391062forward
CNT3066849Saccharum spontaneumLeersia perrieri57.0785.4885.381142forward
CNT30480747Saccharum spontaneumArabidopsis halleri44.4876.7282.81890forward
CNT30364985Saccharum spontaneumSorghum bicolor51.1799.8194.531024forward
CNT3032754Saccharum spontaneumTheobroma cacao53.4281.4881.381069forward
CNT3026527Saccharum spontaneumPopulus trichocarpa43.7389.5683.54875forward
CNT30324534Saccharum spontaneumAsparagus officinalis53.0282.9682.091061forward
CNT30120688Saccharum spontaneumCitrus clementina44.5381.5982.83891forward
CNT30330420Saccharum spontaneumDioscorea rotundata41.9349.5983.08839forward
CNT30595410Saccharum spontaneumEragrostis curvula56.4782.8487.71130forward
CNT30603625Saccharum spontaneumOryza punctata44.8868.586.53898forward
CNT3066362Saccharum spontaneumSelaginella moellendorffii45.6392.683.02913forward

Expression of CNT30460578

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSSVIVLPVRVFTKICMPPLKRKTRWRVDSFWIL*

>peptide 2 (42 aa)
MTNHLVELDMSVHTTDRILITLQQDTLLLPQLTRPPRRRRTR*

>peptide 3 (76 aa)
MKSGFLLDVVICQGAPVLKLLPSKDEPLLIWRNPFLVLDLGLHIVNGVRALHFQRDCLAGKRLDKDLHAPLRRRTR*

>peptide 4 (48 aa)
MSRCWSGGMPSLSWIFALTLSIVSELSTSSVSLPSKCLNKDLHPTSEA*

>peptide 5 (59 aa)
MKSGFLLDVVVSQGAPILQLLPSKDEPLLVRWDALLVLDLRLDVVNCVRALNLKCESSQ*

>peptide 6 (60 aa)
MQGRLLLDIIVSQGAAILELLASKYEPLLVRWNALLILNLGLDIVDSVRTLNLQCDCLAC*

>peptide 7 (68 aa)
MSLCWSGGMPSLSWILVLTLSMVSELSTSRVMVLPVRVLTKICICFKQIETCQKACKHVFLSGDMICN*

>peptide 8 (37 aa)
PAFKHILINVTFINPLQLLVVRVVPSRKSTNANTPAS*

>peptide 9 (32 aa)
MQNRINTDEPFCFLRPGEGLLKNKQHVPWKDM*

Sequence

>CNT30460578
CCCTGCTTTCAAACATATACTGATCAATGTAACTTTTATTAATCCCCTACAATTACTAGTGGTCCGTGTGGTCCCATCACGTAAGTCAACTAACGCAAAT
ACTCCAGCATCCTAAATCAACTGCCTTCAGTTTTTTTTAATAAAAAAATGTTTCAAACAAAATAAATCTTATAAGCACATCATTAGTCCAGTCCACAAAC
GCGAAGAACATACAGGCCCCAGCCAAATGCATATGCTAATTTGTTAAAATAGTGGCAATCTCCCTCAAACGGTAGCATACCCTCGTCAGAAAAGAGTTTC
AGAGACCAAAATTATCGACACAAAAGCTAAAGCATCCGAGGAGCATGATTTTACAAAGTAAACAAAGTTACATCTGAAGAGATACCAAGTACGAACGCAA
CAAGCTATATATAAAGTTTACACAACAGGTTATATAGAAAGTTTACACGACGAAACACTTAGTAGAACTGGATATACAAAGTTTCCATGACGAACCACTT
AGTAGAACTGGATATGTCTGTCCACACTACAGATAGAATTTTAATAACTTTGCAGCAGGACACATTACTACTGCCTCAGTTAACACGGCCACCACGGAGG
CGCAGGACGAGATGAAGAGTGGATTCCTTTTGGATGTTGTAATCTGCCAAGGTGCGCCCGTCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGAT
CTGGAGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCAGAGCTCTCCACTTCCAACGTGATTGTCTTGCCGGTAAGCGTCTT
GACAAAGATTTGCATGCCCCCCTAAGACGCAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGCCCATCCTCCAGCTGCT
TCCCAGCAAAGATGAGCCGCTGTTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCAATTGTGTCAGAGCTCTCAACCTCAAG
TGTGAGTCTTCCCAGTAAGTGTCTTAACAAAGATCTGCATCCCACCTCGGAGGCGTAAAACCAGATGCAGGGTAGACTCCTTCTGGATATTATAGTCAGC
CAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAATATGAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCG
ATAGTGTCAGAACTCTCAACCTCCAGTGTGATTGTCTTGCCTGTTAATGTCTTGACAAAGATCTGCATGCCACCCCTCAGTCGCAAGACAAGATGGAGGG
TAGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGACCATCCTCTAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCCGGGGGAATGCCCTCCTT
ATCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCCAGTGTAATTGTCTTGCCCGTAAGAGTTTTCACAAAGATCTGCATGCCA
CCCCTCAAGCGCAAGACAAGATGGAGGGTAGACTCCTTTTGGATATTGTAGTCAGCCAGGGTGCGGCCGTCCTCTAGCTGCTTGCCAGCAAAGATGAGCC
TCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGTTTTAACATTGTCGATGGTGTCTGAACTCTCAACCTCGAGAGTGATGGTCTTGCCGGT
CAGGGTCTTAACAAAGATCTGCATCTGTTTCAAACAGATAGAAACATGTCAGAAAGCTTGCAAACATGTGTTTTTAAGTGGAGATATGATTTGCAATTGA
GCAAGTTGGAACAGATTTATGGCTGACTAACATGTTATTACAATATATTTTACAGGCTACCATAGCCACATGAATAGTGAGAACTATAGACTTATACATG
CAAAATAGAATTAACACAGATGAACCGTTCTGCTTTCTGCGTCCCGGTGAGGGATTACTAAAAAACAAACAGCATGTCCCGTGGAAGGATATGTAGGACC
A