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Detailed information on CNT30308206


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 2e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30664801Triticum aestivumTriticum dicoccoides12.4623.968875forward
CNT3016364Triticum aestivumZea mays23.9219.1283.33144forward
CNT3067194Triticum aestivumLeersia perrieri37.0438.6585.65223forward
CNT30348037Triticum aestivumEragrostis tef23.7528.6687.41143forward
CNT30596922Triticum aestivumOryza meridionalis38.5426.2187.07232forward
CNT30583731Triticum aestivumEchinochloa crusgalli28.5727.2287.79172forward
CNT30116404Triticum aestivumOryza nivara38.5428.585.34232forward

Expression of CNT30308206

Peptides detected in this lncRNA

>peptide 1 (90 aa)
MDQMGQVKSEGHFLPHWLRRRVRSMGTLSWMPRMLALMAVQRHTAASRSASPPRSGQHCSFSGTPILSFTRFSTLAHTPSFNVLIGQLPPP

>peptide 2 (93 aa)
MVLDGSDGAGEVGGALLAALVEEEGQVDGHIELDAENVGPDGGAEAHGGVEVGEPAQERAALLVLRHTDPELHQVQHVGAHAQLQRVDRAAAPA

>peptide 3 (37 aa)
CISSLAYQVNPFLLRVKLTQFGQTIYSSYTYNPFTNT*

Sequence

>CNT30308206
ATGCATTTCAAGCTTGGCATATCAAGTTAACCCTTTTCTTTTGCGGGTGAAGTTAACACAATTTGGACAAACCATTTATTCCTCATACACATACAATCCT
TTTACAAATACATGAATCATGCATTTAGATACCATAATGAGATAAACTGATCATGTGATCAATCACAAACTTATCAAGCATGCATGCACGAGCGAGGGAG
CCCATGCAAACACCTAACATATAGTACCGGAATTGGAACATAGAAAATATACGTATGGTGCGTACGTATGACATGCAAACTAGTTACGAATAAAAAAATG
CTTGTATAATATTCATCGATGGTGTTGGATGGATCAGATGGGGCAGGTGAAGTCGGAGGGGCACTTCTTGCCGCATTGGTTGAGGAGGAGGGTCAGGTCG
ATGGGCACATTGAGCTGGATGCCGAGAATGTTGGCCCTGATGGCGGTGCAGAGGCACACGGCGGCGTCGAGGTCGGCGAGCCCGCCCAGGAGCGGGCAGC
ACTGCTCGTTCTCCGGCACACCGATCCTGAGCTTCACCAGGTTCAGCACGTTGGCGCACACGCCCAGCTTCAACGTGTTGATAGGGCAGCTGCCCCCGCC
GG