Detailed information on CNT30116276


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 3e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671301Oryza nivaraSetaria viridis13.3931.0594.5109forward
CNT30522474Oryza nivaraSetaria italica12.5321.1688.24102forward
CNT30187034Oryza nivaraSecale cereale28.0148.187.28228forward
CNT30296862Oryza nivaraTriticum aestivum26.945.9186.76219forward
CNT30392194Oryza nivaraTriticum turgidum9.9521.0987.6581forward
CNT30685047Oryza nivaraTriticum urartu29.9846.1288.52244reverse complement
CNT30348037Oryza nivaraEragrostis tef26.943.8985.39219forward
CNT30596926Oryza nivaraOryza meridionalis64.3754.9892.37524forward
CNT30575612Oryza nivaraOryza barthii96.4499.2498.85785forward
CNT30583731Oryza nivaraEchinochloa crusgalli16.0920.7389.31131forward

Expression of CNT30116276

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MLMPRTLALMAVQRQTAASRSTSPPSSGQHSSLAGTPTLSLSRLSTLAHTLSFSASIGHLFPPPDGGDGGGVTGGVGVGQ*

Sequence

>CNT30116276
GCACAAGTAGTACGTACGTACACTGGAGGAAACTTTTATTTGACAGTACGCATTAAAATAACAAGATACATATATAGATGATCGATCTGATCATCAATAA
TCACACTGATAGATCGAGATAAGTATATATGTATGACACAACTGCAACACACAGACTAAGCCATGCAAAGCTTAAGCCTTAATTAGGTAGCTAGGGTTGT
GGTGGTAATGAAGATTAAGAATCAGATGAGTGGGCAGGAGAAGTCGGAAGGGCAGGTCTTGTGGCAGTAGTTGAGGAGGAGGACGAGGTCGACGGGGACG
TTGATGTTGATGCCGAGGACGTTGGCCTTGATGGCGGTGCAGAGGCAGACGGCGGCGTCGAGGTCGACGAGCCCCCCCAGCAGCGGGCAGCACTCCTCGC
TCGCCGGCACCCCCACCTTGAGCTTGAGCAGGTTGAGCACGTTGGCGCACACGCTCAGCTTCAGCGCGTCGATCGGGCACTTATTCCCTCCACCCGACGG
CGGCGACGGAGGCGGCGTCACCGGCGGCGTCGGTGTGGGGCAGTAGGGCTCGCATGCCTGCACTACTGCACCCATCTGCATGGTGAAGAGCACATTGAGG
GCAAGGAACAGCGCACAAACCTGCACCTTCTTGCCGGCCATCTTAATTAATTAGCTAGCTCTACTACTGCTTAGCAATTAATTAGCTTAATTAGCAGCTA
CTGCCTATAGCTCAGCTCGATCGATCGATCAGAAGAAGCTGGAGCTGCTTTTTGATATTTGCTAGCTCGATCGGCCGGGATGCATTTCCTCGGGGGTGTT
TTCGCTCCTATTTA