« Back to Setaria italica search


Detailed information on CNT30522474


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 3e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691814Setaria italicaOryza sativa25.9319.0588125forward
CNT30678173Setaria italicaSetaria viridis21.5833.99100104forward
CNT30187034Setaria italicaSecale cereale21.7822.1584.76105forward
CNT30296754Setaria italicaTriticum aestivum21.1614.7485.29102forward
CNT30226858Setaria italicaHordeum vulgare21.3736.6584.47103forward
CNT30664801Setaria italicaTriticum dicoccoides13.921.4188.0667forward
CNT3016364Setaria italicaZea mays71.9946.0884.15347forward
CNT3067194Setaria italicaLeersia perrieri27.1822.784.73131forward
CNT30685047Setaria italicaTriticum urartu21.1619.2887.25102reverse complement
CNT30348036Setaria italicaEragrostis tef51.0444.0186.59246forward
CNT30365845Setaria italicaSorghum bicolor25.5226.1786.18123forward
CNT30596851Setaria italicaOryza meridionalis24.0714.587.07116forward
CNT30369850Setaria italicaOryza glumipatula26.1415.6185.71126forward
CNT30575711Setaria italicaOryza barthii25.9317.3488125forward
CNT30583731Setaria italicaEchinochloa crusgalli21.9916.7789.62106forward
CNT30116276Setaria italicaOryza nivara25.9315.3688125forward
CNT30593752Setaria italicaEragrostis curvula25.7310.3883.06124forward

Expression of CNT30522474

Peptides detected in this lncRNA

>peptide 1 (70 aa)
RRASEVGRADLAALVEDEVEADGHVEDEVEADGHVEVDAEDIGLNRGAEADGGVEVDEPLQQGAALVVLG*

>peptide 2 (97 aa)
GGQVKSAGQILPHLLRMRLRLTGTLRMRLRLTGTLRWMPRTSALIAVQRQTAASRSTSPCSRGQHWSYWGRPTLTRPRTLAHTLSFSASIGQRPPWP*

Sequence

>CNT30522474
CGGAGGGCAAGTGAAGTCGGCCGGGCAGATCTTGCCGCACTTGTTGAGGATGAGGTTGAGGCTGACGGGCACGTTGAGGATGAGGTTGAGGCTGACGGGC
ACGTTGAGGTGGATGCCGAGGACATCGGCCTTAATCGCGGTGCAGAGGCAGACGGCGGCGTCGAGGTCGACGAGCCCCTGCAGCAGGGGGCAGCACTGGT
CGTATTGGGGTAGGCCGACCTTGACGAGGCCCAGAACGTTAGCGCACACCCTCAGCTTCAGCGCGTCGATCGGGCAGCGCCCGCCGTGGCCGTGAGACGG
CGTCGGCACGACCGGCGGCGTAGGGACGACTGGACCGGGGCAGTAGGGTGTGCAGCCATGGGCGGCAACAGCGAAGAGGAGGCCGAGGGCAAGGAAGAGG
GCAGGCTTGGGGGCCATTGGTGATTGATTGCTCTACGGTTTGAGCAGGAGGTGGTGTTCTAGTACTGTGCACTGCGTGTTCT