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Detailed information on CNT30575711


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 1e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671301Oryza barthiiSetaria viridis15.1231.0594.5109forward
CNT30522474Oryza barthiiSetaria italica14.1521.1688.24102forward
CNT30296862Oryza barthiiTriticum aestivum30.3745.9186.76219forward
CNT30392194Oryza barthiiTriticum turgidum11.2321.0987.6581forward
CNT30685047Oryza barthiiTriticum urartu33.8446.1288.52244reverse complement
CNT30348037Oryza barthiiEragrostis tef30.3743.8985.39219forward
CNT30365845Oryza barthiiSorghum bicolor28.7144.0483.09207forward
CNT30596926Oryza barthiiOryza meridionalis72.6854.9892.37524forward
CNT30583731Oryza barthiiEchinochloa crusgalli18.1720.7389.31131forward

Expression of CNT30575711

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MLMPRTLALMAVQRQTAASRSTSPPSSGQHSSLAGTPTLSLSRLSTLAHTLSFSASIGHLFPPPDGGDGGGVTGGVGVGQ*

Sequence

>CNT30575711
AAATAACAAGATACATATATAGATGATCGATCTGATCATCAATAATCACACTGATAGATCGAGATAAGTATATATGTATGACACAACTGCAACACACAGA
CTAAGCCATGCAAAGCTTAAGCCTTAATTAGGTAGCTAGGGTTGTGGTGGTAATGAAGATTAAGAATCAGATGAGTGGGCAGGAGAAGTCGGAAGGGCAG
GTCTTGTGGCAGTAGTTGAGGAGGAGGACGAGGTCGACGGGGACGTTGATGTTGATGCCGAGGACGTTGGCCTTGATGGCGGTGCAGAGGCAGACGGCGG
CGTCGAGGTCGACGAGCCCCCCCAGCAGCGGGCAGCACTCCTCGCTCGCCGGCACCCCCACCTTGAGCTTGAGCAGGTTGAGCACGTTGGCGCACACGCT
CAGCTTCAGCGCGTCGATCGGGCACTTATTCCCTCCACCCGACGGCGGCGACGGAGGCGGCGTCACCGGCGGCGTCGGTGTGGGGCAGTAGGGCTCGCAT
GCCTGCACTACTGCACCCATCTGCATGGTGAAGAGCACATTGAGGGCAAGGAACAGCGCACAAACCTGCACCTTCTTGCCGGCCATCTTAATTAATTAGC
TAGCTCTACTACTGCTTAGCAATTAATTAGCTTAATTAGCAGCTACTGCCTATAGCTCAGCTCGATCGATCGATCAGAAGAAGCTGGAGCTGCTTTTTGA
TATTTGCTAGCTCGATCGGCC