Detailed information on CNT30192172


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 9e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670799Secale cerealeSetaria viridis23.2130.6788.62123forward
CNT30306637Secale cerealeTriticum aestivum59.8136.6593.06317forward
CNT30226858Secale cerealeHordeum vulgare48.4991.4691.83257forward
CNT3016391Secale cerealeZea mays18.8727.2584100forward
CNT30583731Secale cerealeEchinochloa crusgalli31.5126.4284.43167forward

Expression of CNT30192172

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MVRTYDTQTSYEYNHYACIIFIDSWMDQMGQVKSEGHFLPHWLRRRVR*

>peptide 2 (65 aa)
MGTLSWMPRMLALMAVQRHTAASMSASPLRSGQHCSFAGTPILSFTRFSTSAHTPSFSVLIGQLPP

Sequence

>CNT30192172
GCATTTAAATACCATAACGGGATACACTGATCATTGATCAATCACACGCTTATCAACCATGCATGCATGAGCGAGGGAGCCCATGCAGACACCTGACATA
TAGTACCCGAACTGGAACATAGAAAATATATGTATGGTGCGTACGTATGACACGCAAACTAGTTACGAATACAACCATTATGCATGTATAATATTCATCG
ATAGTTGGATGGATCAGATGGGGCAGGTGAAGTCGGAGGGGCACTTCTTGCCGCACTGGTTGAGGAGGAGGGTCAGGTGAAGTCGGAGGGGCAGTTCTTG
CCGCACTGGTTGAGGAGAAGGGTCAGGTCGATGGGCACGTTGAGTTGGATGCCGAGAATGTTGGCCCTGATGGCGGTGCAGAGGCACACGGCGGCGTCGA
TGTCCGCAAGCCCGCTCAGGAGCGGGCAGCACTGCTCGTTTGCCGGCACACCGATCCTGAGCTTCACCAGGTTCAGCACGTCGGCGCACACGCCCAGCTT
CAGCGTGTTGATCGGGCAGCTGCCCCCGCC