Detailed information on CNT3016364


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 2e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692505Zea maysOryza sativa12.0823.5886.8191forward
CNT30677617Zea maysSetaria viridis17.6641.8288.72133forward
CNT30522474Zea maysSetaria italica46.0871.9984.15347forward
CNT30308206Zea maysTriticum aestivum19.1223.9283.33144forward
CNT30226177Zea maysHordeum vulgare8.7621.7890.9166forward
CNT30348037Zea maysEragrostis tef33.0749.985.94249forward
CNT30365845Zea maysSorghum bicolor18.8630.2186.62142forward
CNT30583731Zea maysEchinochloa crusgalli21.1225.1684.91159forward

Expression of CNT3016364

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MMIKSQSESRDRILRGTFLGCWFYLHIQLN*

>peptide 2 (71 aa)
MLVLSPYSAQLVGASEVLRANLAAVVEDEVEAKGHIEVDAEDVGLDGGAEAQCGVEVHQPLQQRATLLVLG*

>peptide 3 (61 aa)
LTRRATRFIDQRSFCLIDTSRKTPQGDREHDCSKTVMVHIFCPLSQNKKCECFLLIIKYKI*

>peptide 4 (85 aa)
MRLRLRGILRWMPRTLALMAVQRHSAASRSTSPSSSGQHCSCWGRPTLTRSSTLAHTLSFSASIGQRPWLCDGTTGGVGTTGPGT*

>peptide 5 (46 aa)
MRGGSEEEAEGKEERNLGSHCGAGVLVLRCVMSSSAGSGAAVRALVL

Sequence

>CNT3016364
CTGACTAGGAGGGCAACGAGATTTATTGATCAACGCTCGTTCTGTCTTATAGATACCTCCCGGAAAACTCCTCAGGGAGACAGAGAACACGATTGTTCTA
AAACAGTAATGGTGCACATATTTTGCCCTCTTTCTCAAAACAAAAAATGTGAATGTTTCTTATTGATAATTAAGTATAAAATATAAAAATAGATAAACAG
TGATGATGATCAAGTCACAATCAGAATCGCGAGATCGAATATTAAGGGGTACATTCCTTGGATGCTGGTTTTATCTCCATATTCAGCTCAATTAGTTGGG
GCAAGTGAAGTCCTCCGGGCAAATCTTGCCGCAGTTGTTGAGGATGAGGTTGAGGCTAAGGGGCATATTGAGGTGGATGCCGAGGACGTTGGCCTTGATG
GCGGTGCAGAGGCACAGTGCGGCGTCGAGGTCCACCAGCCCCTCCAGCAGCGGGCAACATTGCTCGTGCTGGGGTAGACCGACCTTGACGAGGTCCAGCA
CGTTGGCGCACACCTTGAGCTTTAGTGCGTCGATCGGGCAGCGCCCGTGGCTGTGCGACGGCACGACGGGCGGCGTTGGGACGACTGGGCCGGGAACGTA
GGGTTCGCAGCCATGCGCGGCGGCAGCGAAGAGGAGGCTGAGGGCAAGGAAGAGCGCAACCTTGGGAGCCATTGTGGCGCTGGAGTGTTAGTACTACGGT
GTGTGATGAGCAGCAGCGCAGGAAGTGGTGCTGCAGTGCGTGCTCTTGTGCTT