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Detailed information on CNT30554032


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696704Oryza glaberrimaOryza sativa21.531.9992.23103reverse complement
CNT30522415Oryza glaberrimaSetaria italica31.9445.6788.24153forward
CNT30190201Oryza glaberrimaSecale cereale61.5998.0184.41295reverse complement
CNT30305659Oryza glaberrimaTriticum aestivum62.8499.3485.71301forward
CNT30227179Oryza glaberrimaHordeum vulgare58.6699.2984.34281reverse complement
CNT30398547Oryza glaberrimaTriticum turgidum62.8498.6986.05301reverse complement
CNT30561830Oryza glaberrimaActinidia chinensis18.1628.5287.3687reverse complement
CNT30443397Oryza glaberrimaAegilops tauschii61.1796.3884.64293forward
CNT30659171Oryza glaberrimaTriticum dicoccoides62.8499.6784.72301forward
CNT30130300Oryza glaberrimaLolium perenne13.9923.1894.0367reverse complement
CNT3015222Oryza glaberrimaZea mays17.1227.792.6882forward
CNT3067608Oryza glaberrimaLeersia perrieri63.4798.790.79304forward
CNT30653670Oryza glaberrimaRosa chinensis23.3827.2586.61112forward
CNT30687150Oryza glaberrimaTriticum urartu63.0594.3886.09302forward
CNT30368744Oryza glaberrimaSorghum bicolor54.2871.8287.69260forward
CNT30596339Oryza glaberrimaOryza meridionalis28.393497.06136reverse complement
CNT30369610Oryza glaberrimaOryza glumipatula63.6774.3994.1305reverse complement
CNT30105324Oryza glaberrimaOryza longistaminata63.2694.9897.36303reverse complement
CNT30150266Oryza glaberrimaBrachypodium distachyon60.7595.4186.94291forward
CNT30102085Oryza glaberrimaOryza rufipogon83.5172.7395.75400forward
CNT30576754Oryza glaberrimaOryza barthii77.6698.9499.19372reverse complement
CNT30116196Oryza glaberrimaOryza nivara63.6758.2195.08305forward

Expression of CNT30554032

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MAAGLGRHCYRWPARSKLSSGPAGLGRKLWAPRFLEWQALREAGFTEQRILPASNGGRITGRRTAGPLGSRILLQRTTTFFFL*

>peptide 2 (47 aa)
KHKKPLCTRGSPVPPHLVPPRKTSSTHRSINSRIAPLVVAELSSASL*

Sequence

>CNT30554032
AAACACAAAAAGCCACTATGCACGCGGGGATCTCCCGTTCCACCTCATTTAGTCCCACCTCGGAAAACTAGCTCCACACATCGCAGCATAAATAGCCGGA
TTGCGCCCCTTGTTGTCGCCGAGCTCAGCAGCGCGAGCTTGTAACCCGAGCGGGGGCATTAAGGTGGTGTGGACTTTGCCGTATGGCTGCGGGCCTGGGT
CGGCATTGCTACAGATGGCCCGCCCGTTCCAAGTTGAGTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCTGGGCCCCACGGTTCCTAGAGTGGCAGGCAT
TGCGTGAGGCTGGTTTCACAGAGCAGCGAATACTGCCCGCTTCCAACGGTGGAAGGATAACGGGCCGCCGCACTGCTGGCCCGCTTGGGTCTCGCATCCT
ACTCCAACGGACCACCACTTTTTTTTTTCTTTAGAAAAATAAAAACTTCGTTCTGTTTTTCCAGCTAGCTAGTCCGTGC