Detailed information on CNT30102085


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30190201Oryza rufipogonSecale cereale53.6498.0184.07295reverse complement
CNT30305659Oryza rufipogonTriticum aestivum54.7399.3485.38301forward
CNT30227179Oryza rufipogonHordeum vulgare51.0999.2985.05281reverse complement
CNT30398547Oryza rufipogonTriticum turgidum54.7398.6985.71301reverse complement
CNT30554032Oryza rufipogonOryza glaberrima72.7383.5195.75400forward
CNT30662759Oryza rufipogonTriticum dicoccoides52.1894.7285.71287forward
CNT30445279Oryza rufipogonSaccharum spontaneum30.5528.7785.12168reverse complement
CNT3067608Oryza rufipogonLeersia perrieri55.2798.792.11304forward
CNT30653670Oryza rufipogonRosa chinensis20.3627.2586.61112forward
CNT30687150Oryza rufipogonTriticum urartu54.9194.3885.76302forward
CNT30368744Oryza rufipogonSorghum bicolor54.5582.8786.67300forward
CNT30596339Oryza rufipogonOryza meridionalis24.733497.79136reverse complement
CNT30105324Oryza rufipogonOryza longistaminata55.0994.9899.01303reverse complement
CNT30150266Oryza rufipogonBrachypodium distachyon52.9195.4187.29291forward
CNT30576754Oryza rufipogonOryza barthii55.0980.5998.02303reverse complement

Expression of CNT30102085

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MAAGLGRHCYRWPARSKLRSGPAGLGRKLWAPRFLEWQALREAGFTEQRILPASNGGRITGRRTAGPLGSRSLLQRTTTFFF*

>peptide 2 (57 aa)
QIESTKSPRRKKQHMLCTRGSPVPPPLVPPRKTSSTRRNLNSRSASLALAELSSASL*

Sequence

>CNT30102085
CAAATAGAAAGCACAAAAAGCCCACGTAGAAAAAAACAACACATGCTGTGCACGCGGGGATCTCCCGTTCCACCTCCTTTAGTCCCACCTCGAAAAACTA
GCTCCACGCGTCGCAACTTAAATAGCCGGAGCGCGTCCCTTGCACTCGCCGAGCTCAGCAGCGCGAGCTTGTAACCCGAGCGGGGGCATTAAGGTGGTGT
GGACGTTGCCGTATGGCTGCAGGCCTGGGTCGGCATTGCTATAGATGGCCCGCCCGTTCCAAGTTGCGTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCT
GGGCCCCACGGTTCCTAGAGTGGCAGGCATTGCGTGAGGCTGGTTTCACAGAGCAGCGAATACTGCCCGCTTCCAACGGTGGAAGGATAACGGGCCGCCG
CACTGCTGGCCCGCTTGGGTCTCGCAGCCTACTCCAACGGACCACCACTTTTTTTTTTTAAAAAAAAAAACTTTTTCTGTTTTTCCAACTAGCTAGTCCG
AGCACAAAATCATATAAGTTGCAGTTGGATCGAATGCATTTGGTGTTTCG