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Detailed information on CNT30105324


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696704Oryza longistaminataOryza sativa32.2931.9991.26103forward
CNT30522415Oryza longistaminataSetaria italica47.9645.6788.24153reverse complement
CNT30703316Oryza longistaminataQuercus lobata26.9628.0187.2186reverse complement
CNT30727469Oryza longistaminataCorchorus capsularis26.6527.9688.2485reverse complement
CNT30190201Oryza longistaminataSecale cereale92.4898.0184.07295forward
CNT30305659Oryza longistaminataTriticum aestivum94.6799.6785.1302reverse complement
CNT30227179Oryza longistaminataHordeum vulgare88.7110084.81283forward
CNT30398547Oryza longistaminataTriticum turgidum94.6799.0285.43302forward
CNT30561830Oryza longistaminataActinidia chinensis27.2728.5287.3687forward
CNT30554032Oryza longistaminataOryza glaberrima94.9863.2697.36303reverse complement
CNT30443397Oryza longistaminataAegilops tauschii92.4897.0485.42295reverse complement
CNT30662759Oryza longistaminataTriticum dicoccoides90.695.3885.12289reverse complement
CNT30130300Oryza longistaminataLolium perenne2123.1892.5467forward
CNT30232760Oryza longistaminataAnanas comosus22.2615.5790.1471reverse complement
CNT3067608Oryza longistaminataLeersia perrieri95.6199.0391.15305reverse complement
CNT30653670Oryza longistaminataRosa chinensis35.1127.2587.5112reverse complement
CNT30687150Oryza longistaminataTriticum urartu94.9894.6985.48303reverse complement
CNT30368744Oryza longistaminataSorghum bicolor94.0482.8786.67300reverse complement
CNT30596339Oryza longistaminataOryza meridionalis42.633497.06136forward
CNT30369610Oryza longistaminataOryza glumipatula95.6174.3994.1305forward
CNT30150266Oryza longistaminataBrachypodium distachyon91.5495.7486.99292reverse complement
CNT30102085Oryza longistaminataOryza rufipogon94.9855.0999.01303reverse complement
CNT30576754Oryza longistaminataOryza barthii94.9880.5997.03303forward
CNT30116196Oryza longistaminataOryza nivara95.9258.495.1306reverse complement

Expression of CNT30105324

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MPATLGTVGPRAFAQAPPAHYATWNGRAIYSPMPTQACSHTATSTPP*

>peptide 2 (74 aa)
LFFTLMVVRWSRLRDPSGPAVRRPVILPPLEAGSVRCSVKPASRNACHSRNRGAQSFRPSPAGPLRNLERAGHL*

Sequence

>CNT30105324
CTTTTTTTTACCTTAATGGTGGTCCGTTGGAGTAGGCTGCGAGACCCAAGCGGGCCAGCAGTGCGGCGGCCCGTTATCCTTCCACCGTTGGAAGCGGGCA
GTGTTCGCTGCTCTGTGAAACCAGCCTCACGCAATGCCTGCCACTCTAGGAACCGTGGGGCCCAGAGCTTTCGCCCAAGCCCCGCCGGCCCACTACGCAA
CTTGGAACGGGCGGGCCATCTATAGCCCAATGCCGACCCAGGCCTGCAGCCATACGGCAACGTCCACACCACCTTAATGCCCCCGCTCGGGTTACAAGCT
CGCGCTGCTGAGCTCGGCG