Detailed information on CNT30116196


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30185912Oryza nivaraSecale cereale54.01100.3584.45283reverse complement
CNT30307334Oryza nivaraTriticum aestivum57.2598.6886300forward
CNT30227179Oryza nivaraHordeum vulgare54.0110085.16283reverse complement
CNT30398547Oryza nivaraTriticum turgidum57.8299.3484.82303reverse complement
CNT30554032Oryza nivaraOryza glaberrima58.2163.6795.08305forward
CNT30443397Oryza nivaraAegilops tauschii56.397.0486.1295forward
CNT30662759Oryza nivaraTriticum dicoccoides55.1595.3886.16289forward
CNT3067608Oryza nivaraLeersia perrieri58.499.3590.85306forward
CNT30687150Oryza nivaraTriticum urartu58.029584.87304forward
CNT30368744Oryza nivaraSorghum bicolor57.2582.8787300forward
CNT30596339Oryza nivaraOryza meridionalis24.2431.7597.64127reverse complement
CNT30369610Oryza nivaraOryza glumipatula66.2284.6397.69347reverse complement
CNT30105324Oryza nivaraOryza longistaminata58.495.9295.1306reverse complement
CNT30148640Oryza nivaraBrachypodium distachyon57.6399.0286.09302forward
CNT30100780Oryza nivaraOryza rufipogon95.9990.4799.01503reverse complement
CNT30575771Oryza nivaraOryza barthii96.1883.4498.02504forward

Expression of CNT30116196

Peptides detected in this lncRNA

>peptide 1 (58 aa)
SRRAQQRELVTRAGALRWCGRCRMAAGLGWQCHRWPARSKLRSLGRRGLSESSGLTVP*

>peptide 2 (33 aa)
LPPSSAARACNPSGGIKVVWTLPYGCGPGLAVP*

Sequence

>CNT30116196
CTCCCGCCGAGCTCAGCAGCGCGAGCTTGTAACCCGAGCGGGGGCATTAAGGTGGTGTGGACGTTGCCGTATGGCTGCGGGCCTGGGTTGGCAGTGCCAT
AGATGGCCCGCCCGTTCCAAGTTGCGTAGTTTGGGCCGGCGGGGCTTGAGCGAAAGCTCTGGCCTCACGGTTCCCTAGAGTGGCAGGCATTGCGTGAGGC
TGGCTTCACAGAGCAGCGAATACTGTCCGCTTCCAACGGTGGAAGGATAACGGGCCGCCGCACTGCTGGCCCGCTTGGGTCTCGCAGCCTACTCCAACGG
ACCACCACTTTTTTTATTATTATTTTCCCATCTTGTTTGCCTGAATTTCCCTCTAACTGACTTGCTGCCACGCATGTAGGCCGTCTTTACGGATCATGAA
CACGGGTATTCTTGAGCGGTAAAAATCCAACTTGTATGTATTTGTACACTTCATTATCTAAAAAAGAATATATTTGTACACTTTGTTGTAAACAATTCGA
TGGAAAAAAAAATTAAAGCTGGTG