Detailed information on CNT30368744


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727469Sorghum bicolorCorchorus capsularis24.5929.2889.8989forward
CNT30185973Sorghum bicolorSecale cereale66.5787.6489.21241forward
CNT30305911Sorghum bicolorTriticum aestivum70.1784.1189.76254forward
CNT30227179Sorghum bicolorHordeum vulgare67.9686.9388.62246reverse complement
CNT30398547Sorghum bicolorTriticum turgidum70.4483.6189.02255reverse complement
CNT30554032Sorghum bicolorOryza glaberrima71.8254.2887.69260forward
CNT30443397Sorghum bicolorAegilops tauschii80.6696.0588.01292forward
CNT30662759Sorghum bicolorTriticum dicoccoides70.9984.8290.66257forward
CNT3067608Sorghum bicolorLeersia perrieri74.3187.3485.13269forward
CNT30687150Sorghum bicolorTriticum urartu70.728089.06256forward
CNT30369610Sorghum bicolorOryza glumipatula83.773.985.81303reverse complement
CNT30105324Sorghum bicolorOryza longistaminata82.8794.0486.67300reverse complement
CNT30148640Sorghum bicolorBrachypodium distachyon70.4483.6188.24255forward
CNT30102085Sorghum bicolorOryza rufipogon82.8754.5586.67300forward
CNT30576754Sorghum bicolorOryza barthii71.8269.1587.69260reverse complement
CNT30116196Sorghum bicolorOryza nivara82.8757.2587300forward

Expression of CNT30368744

Peptides detected in this lncRNA

>peptide 1 (45 aa)
APRFSPSSAARACNPSGGSKGDVDVAVWLWAWVECALAGPPVPSW*

>peptide 2 (67 aa)
PHLASRRAQQRELVTRAGALRVMWTLPYGCGPGLSVLLLARPFQVGSGPLGLVRKLGLTVPRVVGTA*

Sequence

>CNT30368744
CCGCACCTCGCTTCTCGCCGAGCTCAGCAGCGCGAGCTTGTAACCCGAGCGGGGGCTCTAAGGGTGATGTGGACGTTGCCGTATGGCTGTGGGCCTGGGT
TGAGTGTGCTCTTGCTGGCCCGCCCGTTCCAAGTTGGTAGTGGACCGCTGGGGCTTGTGCGAAAGCTGGGCCTCACGGTCCCTAGAGTGGTAGGCACAGC
GTGAGGCTGGCTTCACAGAGCAGCGACAACTGCCCGCTTCCAACGGTGGGAGGATAACGGGCCGCTGCACTCTTGGCCCATATCAGGCTCCCAGCCTACT
CCAACGGACCCATCACCTTTTTATTTTTCCTTTCACCTTTTTTTTTATTCAAAAAATCCTAC