Detailed information on CNT30227179


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30185973Hordeum vulgareSecale cereale97.1710095.27275reverse complement
CNT30295471Hordeum vulgareTriticum aestivum97.8891.1296.03277reverse complement
CNT30554032Hordeum vulgareOryza glaberrima99.2958.6684.34281reverse complement
CNT30662921Hordeum vulgareTriticum dicoccoides97.8895.1996.39277reverse complement
CNT3067608Hordeum vulgareLeersia perrieri100.7192.5383.86285reverse complement
CNT30368744Hordeum vulgareSorghum bicolor86.9367.9688.62246reverse complement
CNT30369610Hordeum vulgareOryza glumipatula10069.0284.1283forward
CNT30105324Hordeum vulgareOryza longistaminata10088.7184.81283forward
CNT30102085Hordeum vulgareOryza rufipogon99.2951.0985.05281reverse complement
CNT30576754Hordeum vulgareOryza barthii99.2974.7384.34281forward
CNT30116196Hordeum vulgareOryza nivara10054.0185.16283reverse complement

Expression of CNT30227179

Peptides detected in this lncRNA

>peptide 1 (93 aa)
RWSRLRGPSGRGVQRPVILPPLEAGSYRCSVKPASRCACHIMNREAQLSHRPQAVHYATWNGRASNSTPRPGPQRYISVHITLMPPLGLQALAT

>peptide 2 (30 aa)
VGVGCEAQAAEECSGPLSFHRWKRAVIAAL*

Sequence

>CNT30227179
CGTTGGAGTAGGTTGCGAGGCCCAAGCGGCCGAGGAGTGCAGCGGCCCGTTATCCTTCCACCGTTGGAAGCGGGCAGTTATCGCTGCTCTGTGAAGCCAG
CCTCACGCTGTGCCTGCCACATTATGAACCGTGAGGCCCAGCTTTCGCATAGGCCCCAGGCGGTCCACTACGCAACTTGGAACGGACGGGCCAGCAATAG
CACACCCAGACCAGGCCCGCAGCGCTACATCAGCGTCCACATCACCTTAATGCCCCCACTTGGGTTACAAGCTCTCGCTACTG