Detailed information on CNT30190201


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690183Secale cerealeOryza sativa30.929.2593.5593reverse complement
CNT30305659Secale cerealeTriticum aestivum97.6797.0395.58294reverse complement
CNT30398547Secale cerealeTriticum turgidum97.6796.3995.92294forward
CNT30554032Secale cerealeOryza glaberrima98.0161.5984.41295reverse complement
CNT30443982Secale cerealeAegilops tauschii78.7499.5894.09237reverse complement
CNT30659171Secale cerealeTriticum dicoccoides97.6797.3594.56294reverse complement
CNT30687150Secale cerealeTriticum urartu97.6791.8895.92294reverse complement
CNT30369610Secale cerealeOryza glumipatula98.6772.4483.16297forward
CNT30105324Secale cerealeOryza longistaminata98.0192.4884.07295forward
CNT30319113Secale cerealeAsparagus officinalis24.929.3289.3375forward
CNT30102085Secale cerealeOryza rufipogon98.0153.6484.07295reverse complement
CNT30576754Secale cerealeOryza barthii98.0178.4684.41295forward
CNT30550736Secale cerealeOryza brachyantha51.550.3286.45155reverse complement

Expression of CNT30190201

Peptides detected in this lncRNA

>peptide 1 (35 aa)
KKWWFVGVGCEAQAAQLCSSPLSFHRWKRAVVAAL*

>peptide 2 (88 aa)
KKVVVCWSRLRGPSGPVVQQPVILPPLEAGSCRCSVKPASRCACHIMAREAQLSHRPQRSTTQLGTGGPAVAQTGPGPQRHGYIHTAL*

Sequence

>CNT30190201
AAAAAAAGTGGTGGTTTGTTGGAGTAGGCTGCGAGGCCCAAGCGGCCCAGTTGTGCAGCAGCCCGTTATCCTTCCACCGTTGGAAGCGGGCAGTTGTCGC
TGCTCTGTGAAGCCAGCCTCACGCTGTGCCTGCCACATTATGGCCCGTGAGGCCCAGCTTTCGCACAGGCCCCAGCGGTCCACTACTCAACTTGGAACGG
GCGGGCCAGCAGTCGCACAAACCGGACCAGGCCCGCAGCGCCACGGCTACATCCACACCGCCTTATAGCCCCCGCTCGGGTTACAAGCTCACGCTACTGA
A