« Back to Oryza glumipatula search


Detailed information on CNT30369610


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696704Oryza glumipatulaOryza sativa20.7326.491.7685forward
CNT30522415Oryza glumipatulaSetaria italica37.846.2787.1155reverse complement
CNT30190201Oryza glumipatulaSecale cereale72.4498.6783.16297forward
CNT30307334Oryza glumipatulaTriticum aestivum73.1798.6884.67300reverse complement
CNT30227179Oryza glumipatulaHordeum vulgare69.0210084.1283forward
CNT30398547Oryza glumipatulaTriticum turgidum73.999.3483.5303forward
CNT30554032Oryza glumipatulaOryza glaberrima74.3963.6794.1305reverse complement
CNT30443397Oryza glumipatulaAegilops tauschii71.9597.0484.75295reverse complement
CNT30662759Oryza glumipatulaTriticum dicoccoides70.4995.3884.78289reverse complement
CNT3015222Oryza glumipatulaZea mays2027.791.4682reverse complement
CNT3067608Oryza glumipatulaLeersia perrieri74.1598.790.79304reverse complement
CNT30687150Oryza glumipatulaTriticum urartu74.159583.55304reverse complement
CNT30339268Oryza glumipatulaEragrostis tef25.1235.1590.29103reverse complement
CNT30368744Oryza glumipatulaSorghum bicolor73.983.785.81303reverse complement
CNT30596339Oryza glumipatulaOryza meridionalis33.173494.85136forward
CNT30105324Oryza glumipatulaOryza longistaminata74.3995.6194.1305forward
CNT30148640Oryza glumipatulaBrachypodium distachyon73.6699.0284.77302reverse complement
CNT30100780Oryza glumipatulaOryza rufipogon84.8862.5997.7348forward
CNT30575771Oryza glumipatulaOryza barthii85.1257.7896.85349reverse complement
CNT30116196Oryza glumipatulaOryza nivara84.6366.2297.69347reverse complement

Expression of CNT30369610

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MPATLGTVRPESFRSSPAGPTTQLGTGGPSMALPTQARSHTATSTPP*

Sequence

>CNT30369610
TAGTAAGAATTTAGTAAGAAAAAGTTAGTACGTATAGCCTTTTCCAATAAAAAAAAGTGGGTAAATTCAGGCAAACAAGATGGGAAAATAATAATAAAAA
AAAGTGGTGGTCCGTTGGAGTAGGCTGCGAGACCCAAGCGGGCCAGCAGAGCGGCGGCCCGTTATCCTTCCACCGTTGGATGCGGACAGTATTCGCTGCT
CTGTGAAGCCAGCCTCACGCAATGCCTGCCACTCTAGGAACCGTGAGGCCAGAAAGCTTTCGCTCAAGCCCCGCCGGCCCAACTACGCAACTTGGAACGG
GCGGGCCATCTATGGCACTGCCAACCCAGGCCCGCAGCCACACGGCAACGTCCACACCACCTTAATGCCCCCGCTCGGGTTACAAGCTCGCGCTGCTGAG
CTCGGCGAGA