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Detailed information on CNT30596339


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522415Oryza meridionalisSetaria italica18.2521.7995.8973reverse complement
CNT30728687Oryza meridionalisCorchorus capsularis16.521.7890.9166reverse complement
CNT30185912Oryza meridionalisSecale cereale31.2544.3392125forward
CNT30307334Oryza meridionalisTriticum aestivum31.2541.1294.4125reverse complement
CNT30227081Oryza meridionalisHordeum vulgare31.2542.2391.2125reverse complement
CNT30391788Oryza meridionalisTriticum turgidum31.2541.3992125reverse complement
CNT30554032Oryza meridionalisOryza glaberrima3428.3997.06136reverse complement
CNT30443397Oryza meridionalisAegilops tauschii3140.7992.74124reverse complement
CNT30669640Oryza meridionalisTriticum dicoccoides31.541.5893.65126reverse complement
CNT3015222Oryza meridionalisZea mays17.7523.9994.3771reverse complement
CNT3067608Oryza meridionalisLeersia perrieri3444.1694.85136reverse complement
CNT30688275Oryza meridionalisTriticum urartu31.2542.9692.8125reverse complement
CNT30339268Oryza meridionalisEragrostis tef24.533.4591.8498reverse complement
CNT30361740Oryza meridionalisSorghum bicolor19.7525.992.4179reverse complement
CNT30369610Oryza meridionalisOryza glumipatula3433.1794.85136forward
CNT30105324Oryza meridionalisOryza longistaminata3442.6397.06136forward
CNT30150512Oryza meridionalisBrachypodium distachyon3140.6691.94124reverse complement
CNT30102085Oryza meridionalisOryza rufipogon3424.7397.79136reverse complement
CNT30576754Oryza meridionalisOryza barthii3436.1797.06136forward
CNT30116196Oryza meridionalisOryza nivara31.7524.2497.64127reverse complement

Expression of CNT30596339

Peptides detected in this lncRNA

>peptide 1 (82 aa)
FSCYPQKQNAFSIGFNRTNLRNGFNCELWTEHATQTNIRKYTNWIQSHLLTKNITKHQMQKKHVHGLASWKNRKKKSSGSLE*

>peptide 2 (37 aa)
SPAIRKNRMHFQLDSIAPTCAMDSIVNCGLNTPPKRT*

Sequence

>CNT30596339
CTTCTCCTGCTATCCGCAAAAACAGAATGCATTTTCAATTGGATTCAATCGCACCAACTTGCGCAATGGATTCAATTGTGAATTGTGGACTGAACACGCC
ACCCAAACGAACATAAGGAAATACACCAATTGGATTCAATCCCATCTACTTACAAAGAACATAACGAAACACCAAATGCAAAAGAAACATGTGCACGGAC
TAGCTAGCTGGAAAAACAGAAAAAAAAAAAGCAGTGGTTCGTTGGAGTAGGCTGCGAGACCCAAGCGGGCCAGCAGTGCGGCGGCCCGTTATCCTTCCAC
CGTTGGAAGCGGGCAGTATTCGCTGCTCTGTGAAACCAGCCTCACGCAATGCCTGCCACTACAGGAACCCACGCCCTCGGCGCCTTCACGGAAAACCCCG