Detailed information on CNT30653670


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3046251Rosa chinensisPrunus dulcis45.2661.7987.1186forward
CNT3093739Rosa chinensisSolanum tuberosum17.7624.0189.0473forward
CNT30566737Rosa chinensisActinidia chinensis26.0342.9788.79107reverse complement
CNT30510959Rosa chinensisSolanum lycopersicum17.2723.2888.7371forward
CNT30554032Rosa chinensisOryza glaberrima27.2523.3886.61112forward
CNT30612441Rosa chinensisArabis alpina34.0645.4584.29140reverse complement
CNT30626010Rosa chinensisDaucus carota18.9825.5788.4678forward
CNT30644675Rosa chinensisCannabis sativa36.2537.5385.23149reverse complement
CNT30105324Rosa chinensisOryza longistaminata27.2535.1187.5112reverse complement
CNT30102085Rosa chinensisOryza rufipogon27.2520.3686.61112forward
CNT30576754Rosa chinensisOryza barthii27.2529.7985.71112reverse complement

Expression of CNT30653670

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MGALKCWDFGSALAGRVRRGYILTRPFQARSWAMWLGRRLWASWFLERRAMREAGFTEQRSLPSPYSGRITGRCLPNPLWPR*

Sequence

>CNT30653670
GCCGAGCTTGGTCACGTGAGCTTATAACCCAAAGATGGGGGCATTGAAGTGTTGGGACTTTGGTTCAGCATTAGCGGGTCGGGTTCGGCGTGGCTATATT
CTGACCCGCCCGTTCCAAGCAAGGAGTTGGGCTATGTGGCTTGGGCGAAGGCTCTGGGCCTCATGGTTCCTAGAGAGGAGGGCAATGCGTGAGGCTGGTT
TCACAGAGCAGCGATCACTTCCCTCTCCTTACAGTGGAAGGATAACGGGTCGGTGCCTTCCAAATCCACTATGGCCCCGCTAGGCTGCCCATTCGAACCA
ACACTTTTTTTTCGATTGCAATAGTTATTTAAGTTAGGGCTGGGCACGGGCCGGGATCTTGGTAATCCCGATCCCGGGCTCGGAATTATTTTTCGGGACG
GGACGGGACGG