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Detailed information on CNT30576754


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696704Oryza barthiiOryza sativa27.3931.9992.23103forward
CNT30522415Oryza barthiiSetaria italica40.6945.6787.58153reverse complement
CNT30703316Oryza barthiiQuercus lobata22.8728.0187.2186reverse complement
CNT30727469Oryza barthiiCorchorus capsularis22.6127.9688.2485reverse complement
CNT30190201Oryza barthiiSecale cereale79.7999.6784.67300forward
CNT30305659Oryza barthiiTriticum aestivum80.0599.3485.71301reverse complement
CNT30227179Oryza barthiiHordeum vulgare74.7399.2984.34281forward
CNT30398547Oryza barthiiTriticum turgidum81.38100.3385.95306forward
CNT30561830Oryza barthiiActinidia chinensis23.1428.5287.3687forward
CNT30554032Oryza barthiiOryza glaberrima98.9477.6699.46372reverse complement
CNT30443397Oryza barthiiAegilops tauschii81.38100.6684.31306reverse complement
CNT30659171Oryza barthiiTriticum dicoccoides81.12100.9984.92305reverse complement
CNT30130300Oryza barthiiLolium perenne17.8223.1894.0367forward
CNT3067608Oryza barthiiLeersia perrieri81.9110091.23308reverse complement
CNT30653670Oryza barthiiRosa chinensis29.7927.2585.71112reverse complement
CNT30687150Oryza barthiiTriticum urartu81.6595.9485.99307reverse complement
CNT30368744Oryza barthiiSorghum bicolor69.1571.8287.69260reverse complement
CNT30596339Oryza barthiiOryza meridionalis40.433895.39152forward
CNT30105324Oryza barthiiOryza longistaminata80.5994.9897.03303forward
CNT30150266Oryza barthiiBrachypodium distachyon78.4696.7287.12295reverse complement
CNT30102085Oryza barthiiOryza rufipogon98.1467.0995.12369reverse complement

Expression of CNT30576754

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MPATLGTVGPRAFAQAPPAHYSTWNGRAICSNADPGPQPYGKVHTTLMPPLGLQARAAELGDNK

>peptide 2 (62 aa)
MRDPSGPAVRRPVILPPLEAGSIRCSVKPASRNACHSRNRGAQSFRSSPAGPLLNLERAGHL*

Sequence

>CNT30576754
TTGTGCACGGACTAGCTAGCTGGAAAAACAGAACGAAGTTTTTATTTTTCTAAAGAAAAATAAAAAGTGGTGGTCCGTTGGAGTAGGATGCGAGACCCAA
GCGGGCCAGCAGTGCGGCGGCCCGTTATCCTTCCACCGTTGGAAGCGGGCAGTATTCGCTGCTCTGTGAAACCAGCCTCACGCAATGCCTGCCACTCTAG
GAACCGTGGGGCCCAGAGCTTTCGCTCAAGCCCCGCCGGCCCACTACTCAACTTGGAACGGGCGGGCCATCTGTAGCAATGCCGACCCAGGCCCGCAGCC
ATACGGCAAAGTCCACACCACCTTAATGCCCCCGCTCGGGTTACAAGCTCGCGCTGCTGAGCTCGGCGACAACAAG