Detailed information on CNT30370572


BLAST search results

BLAST vs Swiss-Prot:
sp|O65581|ALFC5_ARATH, E-value = 8e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690595Oryza glumipatulaOryza sativa25.416.9287.162forward
CNT30676451Oryza glumipatulaSetaria viridis24.1813.4789.8359forward
CNT30524056Oryza glumipatulaSetaria italica24.185.4589.8359forward
CNT30222685Oryza glumipatulaHordeum vulgare52.4643.5482.81128forward
CNT30568685Oryza glumipatulaActinidia chinensis26.645.887.6965forward
CNT30552124Oryza glumipatulaOryza glaberrima25.416.787.162forward
CNT30443030Oryza glumipatulaAegilops tauschii81.5637.6992.96199forward
CNT30242401Oryza glumipatulaAvena sativa40.9820.7592100forward
CNT30457732Oryza glumipatulaSaccharum spontaneum25.414.6587.162forward
CNT30135152Oryza glumipatulaLolium perenne25.419.5790.3262forward
CNT30359195Oryza glumipatulaLactuca sativa23.3611.987.7257forward
CNT30551343Oryza glumipatulaOryza brachyantha72.1328.0397.73176forward

Expression of CNT30370572

Peptides detected in this lncRNA

>peptide 1 (75 aa)
DGALLQGTAEGEGERPWLEHLQLVHGVQVLRRLLLALPAGEEHYPGHRRWHRAPQRRHRVLPYHLRANLYNRLSF*

>peptide 2 (73 aa)
LMVLCCRARPKEKVSVHGLSTSSLFMAFRFCDASSSLCPPERNTIPGTAGGTVRRSAATVYSPITSAPTYITG*

Sequence

>CNT30370572
TTGATGGTGCTCTGCTGCAGGGCACGGCCGAAGGAGAAGGTGAGCGTCCATGGCTTGAGCACCTCCAGCTTGTTCATGGCGTTCAGGTTCTGCGACGCCT
CCTCCTCGCTCTGCCCGCCGGAGAGGAACACTATCCCGGGCACCGCCGGTGGCACCGTGCGCCGCAGCGCCGCCACCGTGTACTCCCCTATCACCTCCGC
GCCAACCTATATAACAGGTTAAGCTTTTAGATTGAACTGATCGG