Detailed information on CNT30671299


BLAST search results

BLAST vs Swiss-Prot:
sp|P12857|ADT2_MAIZE, E-value = 9e-45

BLAST vs NONCODE:
NONATHT001826, E-value = 6e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315326Setaria viridisCorylus avellana62.4243.5683.33186forward
CNT30618446Setaria viridisSesamum indicum70.138.5385.65209forward
CNT30402838Setaria viridisBeta vulgaris29.5310.5985.2388forward
CNT30161998Setaria viridisPistacia vera61.4119.1884.15183forward
CNT3089948Setaria viridisSolanum tuberosum46.3129.8183.33138forward
CNT30225406Setaria viridisHordeum vulgare29.8740.6484.2789forward
CNT3085275Setaria viridisVigna radiata61.4129.6185.25183forward
CNT30539350Setaria viridisBrassica napus62.0828.3388.65185forward
CNT30313064Setaria viridisCamelina sativa62.0823.7588.65185forward
CNT30216129Setaria viridisKalanchoe fedtschenkoi67.4533.5686.57201forward
CNT30647898Setaria viridisRosa chinensis66.4428.9985.35198forward
CNT30623304Setaria viridisDaucus carota62.4217.0583.33186forward
CNT30722298Setaria viridisTriticum spelta56.7122.0391.72169forward
CNT30426981Setaria viridisPapaver somniferum47.9936.0286.01143forward
CNT30570934Setaria viridisVitis vinifera32.8929.785.7198forward
CNT30706971Setaria viridisPrunus avium66.1121.6289.34197forward
CNT3037416Setaria viridisCucumis melo62.4228.0586.02186forward
CNT30175264Setaria viridisVigna angularis33.8920.7484.16101forward
CNT3049150Setaria viridisCucumis sativus61.4125.2886.34183forward

Expression of CNT30671299

Peptides detected in this lncRNA

>peptide 1 (33 aa)
LLPEEEDLKLVIARKHTSTSNGTEDVGTSPLEQ*

>peptide 2 (31 aa)
TSSRRRGSEAGHSQKAHQHQQWHGGCWHQPP*

>peptide 3 (50 aa)
MARRMLAPAPLNNDLGPSFFRICWKASMELLYLTASPDVIIILLRTVSMG*

Sequence

>CNT30671299
ACTTCTTCCCGAAGAAGAGGATCTGAAGCTGGTCATAGCCAGAAAGCACACCAGCACCAGCAATGGCACGGAGGATGTTGGCACCAGCCCCCTTGAACAA
TGACTTAGGGCCCTCCTTCTTCAGGATCTGCTGGAAGGCATCCATGGAGCTCTTGTACTTGACAGCCTCACCAGACGTCATCATCATCCTTCTGCGGACA
GTGTCAATGGGGTAAGATGCAAGACCAGCGGGGGGAGGGAGGGCAGACTGGGCGGCGGCTCCGATCTTTCAGAGGCGCGTCGAGTTGGGAGGGGGAGC