Detailed information on CNT30681212


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 7e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535924Triticum urartuEucalyptus grandis34.3955.2984.57162forward
CNT30267763Triticum urartuChenopodium quinoa51.3834.7283.47242forward
CNT3091554Triticum urartuSolanum tuberosum75.1651.4580.79354forward
CNT30385584Triticum urartuTriticum turgidum66.8865.3596.51315forward
CNT30573979Triticum urartuVitis vinifera64.1251.879.8302forward

Expression of CNT30681212

Peptides detected in this lncRNA

>peptide 1 (36 aa)
CSLEKSDCTGSSSLGCLENRYLKDCTWPKKGCSSVK*

>peptide 2 (29 aa)
MWGCSSEMWESMMDWLESMMDCSGCRKESQ

>peptide 3 (75 aa)
MTDCMQEMWGCMMAMLGYKMVKSGCMKEMSDYKMATLGYKMAMTGCMPETSGSMLERSGCMQEMSGSMPEMLDCS*

Sequence

>CNT30681212
CTGTAGTTTGGAGAAGTCTGACTGTACGGGCTCATCATCCTTGGGCTGCTTGGAGAATAGATATTTGAAGGACTGTACTTGGCCGAAGAAGGGCTGTAGC
TCGGTGAAGTAGGGCTGTAGCTCGGTGACGTCGGGCAGTAACCAGGCGATGACGGACTGTATGCAGGAGATGTGGGGCTGTATGATGGCGATGTTGGGCT
ATAAGATGGTGAAGTCGGGCTGTATGAAGGAGATGTCGGACTATAAGATGGCGACGTTGGGTTATAAGATGGCGATGACGGGCTGTATGCCGGAGACGTC
GGGCAGTATGCTGGAGAGGTCGGGCTGTATGCAGGAGATGTCGGGCAGTATGCCGGAGATGTTGGACTGTAGCTAGGAGATGTGGGGCTGTAGCTCGGAG
ATGTGGGAGAGTATGATGGACTGGTTGGAGAGTATGATGGACTGCTCGGGCTGTAGGAAGGAGAGCCAGGA