Detailed information on CNT30710559


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 7e-142

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535924Glycine maxEucalyptus grandis43.4897.9580.14287forward
CNT30379091Glycine maxManihot esculenta85.7695.9379.15566forward
CNT3091337Glycine maxSolanum tuberosum82.8867.0381.17547forward
CNT3067990Glycine maxLeersia perrieri3560.6381.39231forward
CNT30648676Glycine maxRosa chinensis54.8548.5983.15362forward
CNT30620243Glycine maxCajanus cajan50.45100.385.59333forward
CNT30573870Glycine maxVitis vinifera71.6767.0981.18473forward
CNT30705859Glycine maxPrunus avium72.1263.7281.51476forward
CNT30121049Glycine maxCitrus clementina52.5832.0783.86347forward
CNT30330871Glycine maxDioscorea rotundata42.5838.8780.43281forward

Expression of CNT30710559

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MARLGYMRVRLGCIQAMWGCKQVKLDYKKEKSDYRKEMWGCKLVKWGCKLVKWGCSWVM*

>peptide 2 (35 aa)
YSSVMWDYMDLMETISDCLENMLTKDYTLLTVDCN*

Sequence

>CNT30710559
CTATAGTTCGGTGATGTGGGACTATATGGACTTGATGGAGACAATCTCGGACTGCTTGGAGAATATGCTAACGAAGGACTATACTTTGCTGACTGTGGAT
TGTAACTAGGGGAAGTAGGGCTATACGATGGCGAGGTTGGGCTATATGAGGGTGAGGTTGGGCTGTATCCAGGCGATGTGGGGCTGTAAGCAGGTGAAGT
TGGACTATAAGAAGGAGAAGTCGGACTATAGGAAGGAGATGTGGGGCTGTAAGCTGGTGAAGTGGGGCTGTAAGCTGGTGAAGTGGGGCTGTAGCTGGGT
GATGTAGGGCTGTAGCTGGGTGATGTAGGACTGTAGCTGGGTGATGTGGGAGAGTAGGATGGACTGGTAGGCGAATAAGCTGGACTTGTAGGACTATATC
CCGGAGAGCTAGGACTATAAGTCGGAGAGGTGGGACTGTACCCAGGTGACGTGGGACTGTACCCGGGTGACGTGGGGCTGTATCCGGGTGAAGTGGGACT
GTACCCGGGTGATGAGGGACTATAGCCTGGGGATGATGGGCTGTAACCAGGAGATGAAGTAGGAGAAAATGCCATCCCACCAACATAAGGTGAAAACTGT
GCATCGCTAGTTGGAGAGAGCCGTAAATTTGGGCTCAACAAATAACTGGGAGACATCAAG