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Detailed information on CNT3050576


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAG0|TBA2_GOSHI, E-value = 9e-16

BLAST vs NONCODE:
NONPOPT002020, E-value = 1e-34

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522155Cucumis sativusSetaria italica22.6612.9782.46114forward
CNT30377201Cucumis sativusArabidopsis thaliana49.943.8881.67251forward
CNT30728063Cucumis sativusCorchorus capsularis52.2930.382.51263forward
CNT30402401Cucumis sativusBeta vulgaris43.1418.2781.57217forward
CNT30710178Cucumis sativusGlycine max54.4764.6280.29274forward
CNT30559885Cucumis sativusActinidia chinensis54.4752.2981.39274forward
CNT30586804Cucumis sativusMusa acuminata24.2515.881.97122forward
CNT30542792Cucumis sativusBrassica napus35.3941.0180.34178forward
CNT30252641Cucumis sativusAvena sativa41.3525.5882.21208forward
CNT30614070Cucumis sativusArabis alpina23.668.6190.76119forward
CNT30209019Cucumis sativusHelianthus annuus54.4732.8181.75274forward
CNT30627268Cucumis sativusDaucus carota53.4821.7381.04269forward
CNT30341625Cucumis sativusEragrostis tef24.4512.6286.18123forward
CNT30369370Cucumis sativusOryza glumipatula24.4518.5586.18123forward
CNT30332119Cucumis sativusDioscorea rotundata24.4519.3785.37123forward
CNT30116105Cucumis sativusOryza nivara22.6615.4583.33114forward
CNT30602702Cucumis sativusGaldieria sulphuraria21.2711.8885.98107forward

Expression of CNT3050576

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MTVNCSETRRNISCIEVEFPMNVEDIDNPVGGMSQTLDLTLFGIHSTK*

>peptide 2 (31 aa)
LFTARNLKHFIQPFILTELIPYVNNLMQQQI*

Sequence

>CNT3050576
ACTGTTTACTGCAAGGAATCTCAAACATTTCATTCAACCTTTCATACTTACAGAACTCATCCCATATGTCAATAATTTAATGCAACAACAAATTTAGAAC
TTATTCACTCCAAAGCCTATATACTTGGCAACACAAACAGAGATTCATCAGGATACATTTTCAAATTTCCTCGTCTCTTATTAGCGCTACAACACATCTT
CTTCCACCTCCTCCTCATCCTCTGCCACAGCATCTTGATACTGCTGGTACTCTGATACCAAATCATTCATATTACTCTCAGCCTCAGTGAACTCCATCTC
ATCCATTCCCTCCCCTGTGTACCAATGCAAAAACGCCTTCCTCCTGAACATGACCGTGAATTGTTCAGAAACTCGCCGAAACATCTCTTGTATTGAGGTC
GAGTTTCCCATGAATGTTGAAGACATTGACAACCCAGTTGGAGGGATGTCACAAACACTTGATTTAACATTGTTTGGGATCCACTCAACAAAATAAGATG
AGT