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Detailed information on CNT30542792


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR0|TBB3_ARATH, E-value = 4e-94

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673843Brassica napusSetaria viridis94.4790.1183.41410forward
CNT30522713Brassica napusSetaria italica75.8188.6881.76329forward
CNT30641074Brassica napusNymphaea colorata52.361.8581.06227forward
CNT30534291Brassica napusEucalyptus grandis31.821.6682.61138forward
CNT30516889Brassica napusJuglans regia26.7319.1781.9116forward
CNT30377201Brassica napusArabidopsis thaliana63.1347.994.16274forward
CNT30727252Brassica napusCorchorus capsularis60.635.1182.89263forward
CNT30381383Brassica napusManihot esculenta55.0713.683.26239forward
CNT30402401Brassica napusBeta vulgaris61.5222.4785.77267forward
CNT30629386Brassica napusVigna unguiculata23.9640.3185.58104forward
CNT30196370Brassica napusPisum sativum62.928.6580.59273forward
CNT30486254Brassica napusOlea europaea26.7330.2983.62116forward
CNT30708222Brassica napusGlycine max58.0662.5383.33252forward
CNT30168132Brassica napusPistacia vera21.222.3885.8792forward
CNT3092760Brassica napusSolanum tuberosum25.5816.0481.98111forward
CNT30291318Brassica napusTriticum aestivum26.2734.2389.47114forward
CNT30223001Brassica napusHordeum vulgare21.4333.4589.2593forward
CNT30390564Brassica napusTriticum turgidum21.6630.9288.394forward
CNT30562824Brassica napusActinidia chinensis93.7873.283.78407forward
CNT30586804Brassica napusMusa acuminata21.8912.3184.2195forward
CNT30511260Brassica napusSolanum lycopersicum20.7422.3386.6790forward
CNT30553024Brassica napusOryza glaberrima27.658.486.67120forward
CNT30442409Brassica napusAegilops tauschii33.8721.9488.44147forward
CNT30252641Brassica napusAvena sativa62.6733.4686.03272forward
CNT3081605Brassica napusBrassica juncea36.6411.5481.76159reverse complement
CNT30261872Brassica napusBrassica rapa58.2928.5982.21253forward
CNT30614070Brassica napusArabis alpina61.5219.3291.01267forward
CNT3015820Brassica napusZea mays90.7886.2183.25394forward
CNT30608822Brassica napusGossypium raimondii56.4536.5783.67245forward
CNT30209019Brassica napusHelianthus annuus59.2230.7884.44257forward
CNT30627268Brassica napusDaucus carota55.0719.3186.61239forward
CNT30681848Brassica napusTriticum urartu61.5230.1785.77267forward
CNT30722427Brassica napusTriticum spelta32.4924.3990.07141forward
CNT30341625Brassica napusEragrostis tef59.9126.6784.62260forward
CNT30368415Brassica napusSorghum bicolor90.3238.183.42392forward
CNT30595566Brassica napusOryza meridionalis36.4131.4182.91158forward
CNT30369350Brassica napusOryza glumipatula33.1820.7286.11144forward
CNT30433292Brassica napusPapaver somniferum59.2224.5282.88257forward
CNT30570854Brassica napusVitis vinifera21.4346.2783.8793forward
CNT30706519Brassica napusPrunus avium31.816.6585.51138forward
CNT3033661Brassica napusTheobroma cacao28.860.184.8125forward
CNT3054138Brassica napusAmborella trichopoda36.1830.9787.26157forward
CNT3024644Brassica napusPopulus trichocarpa59.9112.7184.23260forward
CNT30322043Brassica napusAsparagus officinalis60.8331.5485.61264forward
CNT30119164Brassica napusCitrus clementina44.741.6384.02194forward
CNT30330123Brassica napusDioscorea rotundata62.6726.7283.46272forward
CNT3099512Brassica napusOryza rufipogon29.0321.0787.3126forward
CNT30575061Brassica napusOryza barthii33.1815.8486.11144forward
CNT30117026Brassica napusOryza nivara29.4919.0586.72128forward
CNT30333708Brassica napusCynara cardunculus32.4917.4185.82141forward
CNT3050576Brassica napusCucumis sativus41.0135.3980.34178forward

Expression of CNT30542792

Peptides detected in this lncRNA

>peptide 1 (59 aa)
VYQCKKAFLLNMAVNCSLTRLNISWIDVEFPMKVEAIFRPVGGMSQTVDFTLLGIHSTK*

Sequence

>CNT30542792
CTGTGTACCAATGCAAGAAAGCTTTCCTCCTGAACATGGCTGTGAACTGCTCACTCACACGCCTGAACATCTCTTGGATCGATGTTGAGTTCCCAATGAA
AGTGGAAGCCATCTTCAGACCAGTAGGTGGGATGTCACAGACTGTTGATTTCACATTGTTGGGAATCCACTCAACAAAGTAGGAAGAGTTCTTGTTCTGC
ACGTTCAGCATCTGCTCATCGACTTCCTTTGTGCTCATCTTGCCACGGAACATTGCGGAGGCTGTGAGGGAGCGGTACTGCTGAGAGCCTCTTGAGGTGA
GAGGAGCAAAACCCACCATGAAGAAGTGAAGACGAGGGAATGGGATCAGATTGACCGCAAGCTTACGGAGGTCAGAGTTAAGTTGACCAGGGAATCTCAG
ACAGCATGTGACACCAGACATTGTGGCAGATATC