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Detailed information on CNT30377201


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR0|TBB3_ARATH, E-value = 3e-134

BLAST vs NONCODE:
NONBNAT005393, E-value = 8e-126

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Arabidopsis thalianaOryza sativa54.5554.4580.77312forward
CNT30674634Arabidopsis thalianaSetaria viridis56.2944.4187.89322forward
CNT30534291Arabidopsis thalianaEucalyptus grandis26.7524.0288.24153forward
CNT30727252Arabidopsis thalianaCorchorus capsularis73.9556.4883.69423forward
CNT30402401Arabidopsis thalianaBeta vulgaris55.4226.6885.17317forward
CNT30629386Arabidopsis thalianaVigna unguiculata23.2551.5584.96133forward
CNT30196370Arabidopsis thalianaPisum sativum99.359.682.04568forward
CNT30710178Arabidopsis thalianaGlycine max48.0864.8686.18275forward
CNT30223001Arabidopsis thalianaHordeum vulgare26.5754.6886.84152forward
CNT30390564Arabidopsis thalianaTriticum turgidum29.5555.5988.17169forward
CNT30567082Arabidopsis thalianaActinidia chinensis59.7977.7384.8342forward
CNT30542792Arabidopsis thalianaBrassica napus47.963.1394.16274forward
CNT30511260Arabidopsis thalianaSolanum lycopersicum28.6740.6988.41164forward
CNT30553024Arabidopsis thalianaOryza glaberrima32.3412.9687.03185forward
CNT30252641Arabidopsis thalianaAvena sativa62.7644.1687.19359forward
CNT30261872Arabidopsis thalianaBrassica rapa71.6846.3383.17410forward
CNT30614070Arabidopsis thalianaArabis alpina68.0128.1593.06389forward
CNT3015387Arabidopsis thalianaZea mays56.9920.1586.81326forward
CNT3041960Arabidopsis thalianaChlamydomonas reinhardtii26.5744.5784.21152forward
CNT30608822Arabidopsis thalianaGossypium raimondii55.4247.3183.91317forward
CNT30209019Arabidopsis thalianaHelianthus annuus68.0146.5984.58389forward
CNT30627268Arabidopsis thalianaDaucus carota72.233.3684.75413forward
CNT30681848Arabidopsis thalianaTriticum urartu65.9142.685.41377forward
CNT30341625Arabidopsis thalianaEragrostis tef70.141.1386.78401forward
CNT30368415Arabidopsis thalianaSorghum bicolor61.7134.3186.97353forward
CNT30595966Arabidopsis thalianaOryza meridionalis32.3430.1885.95185forward
CNT30370114Arabidopsis thalianaOryza glumipatula68.0147.581.75389forward
CNT30433292Arabidopsis thalianaPapaver somniferum99.6554.3982.81570forward
CNT30570854Arabidopsis thalianaVitis vinifera26.2274.6386150forward
CNT3033661Arabidopsis thalianaTheobroma cacao33.9293.2784.54194forward
CNT3054138Arabidopsis thalianaAmborella trichopoda53.6760.5584.36307forward
CNT3022163Arabidopsis thalianaPopulus trichocarpa72.949.1784.17417forward
CNT30322043Arabidopsis thalianaAsparagus officinalis74.1350.6684.2424forward
CNT30119164Arabidopsis thalianaCitrus clementina44.4154.5185.43254forward
CNT30330123Arabidopsis thalianaDioscorea rotundata79.7244.7984.21456forward
CNT30575530Arabidopsis thalianaOryza barthii71.6845.481.46410forward
CNT30117026Arabidopsis thalianaOryza nivara23.4319.9485.07134forward
CNT3050576Arabidopsis thalianaCucumis sativus43.8849.981.67251forward

Expression of CNT30377201

Peptides detected in this lncRNA

>peptide 1 (84 aa)
CWYSDTRSFMLLSASVNSISSIPSPVYQCKKAFLLNIAVNCSLTRLNISWIDVEFPMKVEAIFRPVGGISQTVDFTLLGIHSTK*

Sequence

>CNT30377201
TTGCTGGTACTCTGACACAAGATCGTTCATGTTGCTCTCTGCTTCTGTGAACTCCATCTCGTCCATTCCCTCACCTGTGTACCAATGCAAGAAAGCCTTC
CTCCTGAACATAGCTGTGAACTGCTCACTCACTCGCCTGAACATCTCTTGGATCGATGTTGAGTTTCCAATGAAAGTGGAAGCCATCTTCAGACCAGTAG
GTGGGATATCACAGACTGTTGATTTCACGTTGTTGGGGATCCACTCCACAAAGTAGGACGAGTTCTTGTTCTGAACATTCAGCATCTGCTCGTCAACTTC
CTTTGTGCTCATCTTGCCACGGAACATGGCAGAGGCTGTGAGGTAGCGTCCGTGCCTTGGGTCTGCAGCACACATCATGTTCTTGGAGTCCCACATTTGC
TGGGTGAGCTCAGGGACTGTGAGAGGAGCAAAACCAACCATGAAGAAGTGAAGACGAGGGAATGGGATGAGATTCACAGCAAGCTTACGGAGGTCAGAGT
TGAGTTGACCAGGGAACCTCAGACAGCAAGTCACACCAGACATAGTGGCAGATATCAAATGGTTCAAATCAC