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Detailed information on CNT30627268


BLAST search results

BLAST vs Swiss-Prot:
sp|P20364|TBB1_DAUCA, E-value = 7e-105

BLAST vs NONCODE:
NONBNAT007651, E-value = 4e-83

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674634Daucus carotaSetaria viridis23.6740.4183.28293forward
CNT30522155Daucus carotaSetaria italica18.8226.5181.55233forward
CNT30641074Daucus carotaNymphaea colorata15.5952.5982.9193forward
CNT30534291Daucus carotaEucalyptus grandis14.2227.6383.52176forward
CNT30377201Daucus carotaArabidopsis thaliana33.3672.284.75413forward
CNT30728063Daucus carotaCorchorus capsularis31.5845.0582.35391forward
CNT30381383Daucus carotaManihot esculenta27.9519.6985.55346forward
CNT30402401Daucus carotaBeta vulgaris21.7322.6485.5269forward
CNT30629386Daucus carotaVigna unguiculata9.8547.2981.97122forward
CNT30196370Daucus carotaPisum sativum34.3344.682.59425forward
CNT30486254Daucus carotaOlea europaea15.1148.8386.63187forward
CNT30710178Daucus carotaGlycine max22.9466.9882.75284forward
CNT3047350Daucus carotaPrunus dulcis8.445.6188.46104forward
CNT3092760Daucus carotaSolanum tuberosum12.7622.8384.18158forward
CNT30291318Daucus carotaTriticum aestivum17.8566.3783.26221forward
CNT30223001Daucus carotaHordeum vulgare11.3150.3685.71140forward
CNT30390564Daucus carotaTriticum turgidum12.5250.9987.74155forward
CNT30562824Daucus carotaActinidia chinensis28.9264.3983.8358forward
CNT30542792Daucus carotaBrassica napus19.3155.0786.61239forward
CNT30511260Daucus carotaSolanum lycopersicum14.9445.9188.65185forward
CNT30442409Daucus carotaAegilops tauschii19.3135.6784.52239forward
CNT30252641Daucus carotaAvena sativa31.8348.4683.76394forward
CNT30261872Daucus carotaBrassica rapa35.4649.681.09439forward
CNT30614070Daucus carotaArabis alpina34.0930.5486.26422forward
CNT3015387Daucus carotaZea mays28.1921.5782.81349forward
CNT3041960Daucus carotaChlamydomonas reinhardtii10.136.6683.2125forward
CNT30608822Daucus carotaGossypium raimondii25.6147.3184.54317forward
CNT30203517Daucus carotaHelianthus annuus36.2739.9583.74449forward
CNT30681848Daucus carotaTriticum urartu33.4446.7881.64414forward
CNT30722476Daucus carotaTriticum spelta19.3135.7284.94239forward
CNT30341625Daucus carotaEragrostis tef34.5743.981.54428forward
CNT30368415Daucus carotaSorghum bicolor2934.8982.17359forward
CNT30621647Daucus carotaCajanus cajan7.1938.5384.2789forward
CNT30595966Daucus carotaOryza meridionalis15.4331.1682.2191forward
CNT30369350Daucus carotaOryza glumipatula19.7935.2585.31245forward
CNT30433323Daucus carotaPapaver somniferum35.740.5184.16442forward
CNT30573622Daucus carotaVitis vinifera20.5293.3881.5254forward
CNT30706519Daucus carotaPrunus avium16.424.4985.71203forward
CNT3033661Daucus carotaTheobroma cacao14.787.584.62182forward
CNT3054138Daucus carotaAmborella trichopoda25.6962.7281.45318forward
CNT3024644Daucus carotaPopulus trichocarpa34.3320.7884.94425forward
CNT30322043Daucus carotaAsparagus officinalis37.2455.0882.21461forward
CNT30119164Daucus carotaCitrus clementina20.0353.2283.47248forward
CNT3036150Daucus carotaCucumis melo9.2934.1288.7115forward
CNT30330123Daucus carotaDioscorea rotundata28.8435.0780.11357forward
CNT30150001Daucus carotaBrachypodium distachyon6.6225.9589.0282forward
CNT3099978Daucus carotaOryza rufipogon15.6723.9584.02194forward
CNT30575061Daucus carotaOryza barthii19.7926.9585.31245forward
CNT30333708Daucus carotaCynara cardunculus21.4932.8480.83266forward
CNT3050576Daucus carotaCucumis sativus21.7353.4881.04269forward

Expression of CNT30627268

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MTRKRQQKTATAQHITFLGLPLLHLRNSHPPRQQWHPGTADILKQDRSCYSQPQ*

>peptide 2 (33 aa)
MHGTAGNHGRQSQFSASFLTTSSTESINSAPSV*

>peptide 3 (34 aa)
MSVSPWYLPVESIPCSAHITSQNFAPIWLPHWPP*

>peptide 4 (75 aa)
MLLSASVNSISSIPSPVYQCKKAFLLNIAVNCSLTRLNISWIEVEFPMKVEAIFSPVGGMSQTVDFTLFGIHSTK*

>peptide 5 (98 aa)
MFFESHICWVSSGTLNARYCWEPRETITILSLLPHNIKHRINQLSSLSIMTFRPIVPRTGLPKHEVIRPENLPVRPRSKRIHRPWLQIHQHSPRHIPL*

>peptide 6 (31 aa)
MQNLSHFHTHTERSREIWERFNRERLGLRER*

>peptide 7 (34 aa)
TYKSANRSTGYITTKPEKIVNRFLHTVFKKINRT*

Sequence

>CNT30627268
CAACTTATAAATCTGCAAATAGAAGTACTGGATATATAACCACAAAGCCAGAAAAAATTGTTAACAGATTCTTGCACACGGTATTTAAGAAAATAAACAG
GACATAGTAGCACTAGACAACAGAATGACTCGCAAAAGGCAACAGAAGACTGCAACAGCTCAACACATTACATTTCTTGGCCTTCCTCTTCTTCATCTTC
GAAATAGTCACCCTCCTCGTCAGCAGTGGCATCCTGGTACTGCTGATATTCTGAAACAAGATCGTTCATGTTACTCTCAGCCTCAGTAAACTCCATCTCG
TCCATACCCTCGCCAGTGTACCAATGCAAGAAAGCTTTTCTCCTGAACATAGCTGTAAACTGCTCACTTACACGCCTAAACATCTCTTGGATTGAAGTTG
AATTTCCAATGAAAGTAGAGGCCATCTTCAGTCCGGTTGGGGGAATGTCACAAACAGTTGACTTCACATTGTTTGGGATCCATTCAACAAAGTAAGAGGA
ATTCTTGTTCTGGACGTTGATCATCTGCTCATCAACCTCTTTAGTGCTCATCTTTCCTCTGAACACAGCAGATGCTGTCAGGTATCGTCCATGGCGTGGA
TCAGCTGCACACATCATGTTCTTTGAGTCCCACATCTGCTGGGTAAGCTCAGGTACACTTAATGCACGGTACTGCTGGGAACCACGGGAGACAATCACAA
TTCTCAGCCTCCTTCCTCACAACATCAAGCACCGAATCAATCAACTCAGCTCCCTCAGTATAATGACCTTTCGCCCAATTGTTCCCCGCACCGGACTGCC
CAAACACGAAGTTATCAGGCCTGAAAATCTGCCCGTACGGCCCAGATCTAAGCGAATCCATCGTCCCTGGCTCCAGATCCATCAACACAGCCCTCGGCAC
ATACCTCTGTGAACTCGCCTCATTGTAGTACACGTTGATTCGCTCCAATTGAATGTCCGTGTCTCCCTGGTACCTTCCGGTGGAGTCAATCCCGTGCTCA
GCGCATATCACTTCCCAGAACTTTGCTCCGATCTGGTTACCGCATTGGCCTCCCTGAATATGCAAAATCTCTCTCATTTTCACACACACACAGAGAGATC
GAGAGAGATTTGGGAGAGATTTAACAGAGAGAGATTAGGTTTGAGAGAGAGATGAAATGAGACAGGGGAGAAGGAGAGAGTGTGTATATATATGAGAACT
GTCAGAGTGGGAGGTACAGATTGGGGGTTAATTTAGGG