« Back to Arabis alpina search


Detailed information on CNT30614070


BLAST search results

BLAST vs Swiss-Prot:
sp|P33632|TBB3_ANEPH, E-value = 6e-94

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Arabis alpinaOryza sativa23.4456.5481.17324forward
CNT30674634Arabis alpinaSetaria viridis23.344.4188.2322forward
CNT30522713Arabis alpinaSetaria italica9.9937.292.03138forward
CNT30641074Arabis alpinaNymphaea colorata12.0145.2385.54166forward
CNT30534291Arabis alpinaEucalyptus grandis12.452786.63172forward
CNT30377201Arabis alpinaArabidopsis thaliana28.1568.0193.06389forward
CNT30728063Arabis alpinaCorchorus capsularis27.8644.3584.16385forward
CNT30381383Arabis alpinaManihot esculenta22.0717.3684.26305forward
CNT30402401Arabis alpinaBeta vulgaris21.6425.1785.28299forward
CNT30629386Arabis alpinaVigna unguiculata7.7441.4788.79107forward
CNT30196370Arabis alpinaPisum sativum40.4558.6680.14559forward
CNT30486254Arabis alpinaOlea europaea13.6849.3585.19189forward
CNT30708222Arabis alpinaGlycine max21.272.784.98293forward
CNT3092760Arabis alpinaSolanum tuberosum13.3926.7384.86185forward
CNT30291318Arabis alpinaTriticum aestivum11.3647.1590.45157forward
CNT30223001Arabis alpinaHordeum vulgare9.8448.9288.97136forward
CNT30390564Arabis alpinaTriticum turgidum12.6657.5788175forward
CNT30567082Arabis alpinaActinidia chinensis24.7577.7385.09342forward
CNT30586804Arabis alpinaMusa acuminata12.2321.8982.25169forward
CNT30542792Arabis alpinaBrassica napus19.3261.5291.01267forward
CNT30511260Arabis alpinaSolanum lycopersicum11.2238.4689.03155forward
CNT30442409Arabis alpinaAegilops tauschii12.325.3788.82170forward
CNT30252641Arabis alpinaAvena sativa24.8942.3186.34344forward
CNT30261872Arabis alpinaBrassica rapa26.1240.7982.83361forward
CNT3015387Arabis alpinaZea mays25.2521.5786.82349forward
CNT3041960Arabis alpinaChlamydomonas reinhardtii13.3954.2582.7185forward
CNT30608822Arabis alpinaGossypium raimondii21.7844.9383.72301forward
CNT30209019Arabis alpinaHelianthus annuus30.0349.785.06415forward
CNT30627268Arabis alpinaDaucus carota30.5434.0986.26422forward
CNT30681848Arabis alpinaTriticum urartu25.3339.5586.57350forward
CNT30722476Arabis alpinaTriticum spelta12.325.4188.24170forward
CNT30341625Arabis alpinaEragrostis tef30.0342.5685.3415forward
CNT30368415Arabis alpinaSorghum bicolor25.3334.0186.29350forward
CNT30595966Arabis alpinaOryza meridionalis12.1627.4185.12168forward
CNT30369350Arabis alpinaOryza glumipatula13.5326.9189.3187forward
CNT30433292Arabis alpinaPapaver somniferum28.3637.484.95392forward
CNT30570854Arabis alpinaVitis vinifera9.1963.1886.61127forward
CNT30706519Arabis alpinaPrunus avium13.3922.3284.86185forward
CNT3033661Arabis alpinaTheobroma cacao11.8778.8585.98164forward
CNT3054138Arabis alpinaAmborella trichopoda20.8456.882.29288forward
CNT3024644Arabis alpinaPopulus trichocarpa31.6921.4284.47438forward
CNT30322043Arabis alpinaAsparagus officinalis31.1151.3784.19430forward
CNT30119164Arabis alpinaCitrus clementina19.0356.4485.55263forward
CNT3036150Arabis alpinaCucumis melo8.1833.5391.15113forward
CNT30330123Arabis alpinaDioscorea rotundata23.6632.1284.1327forward
CNT3099978Arabis alpinaOryza rufipogon12.1620.7487.5168forward
CNT30575061Arabis alpinaOryza barthii13.5320.5789.3187forward
CNT30117026Arabis alpinaOryza nivara9.8420.2491.18136forward
CNT30333708Arabis alpinaCynara cardunculus14.8325.3187.8205forward
CNT3050576Arabis alpinaCucumis sativus8.6123.6690.76119forward

Expression of CNT30614070

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MVYEVLDIHMTIIQKVLIQCCSLRFQIEQYCDTK*

>peptide 2 (38 aa)
MDLTARGSEFKSPEADIIQGLVIKNHTLICILNKLMNR*

>peptide 3 (75 aa)
MLLSASVNSISSIPSPVYQCKKAFLLNIAVNCSLTRLNISWIEVELPMKVEAILRPVGGMSQTVDFTLLGIHSTK*

>peptide 4 (78 aa)
MKTREWDQIHSKLTQVGVKLTREPQTASHTRHSSRDQVVQITDCRQRMNQVCKPQTHTTYNMLNKSTTSIKLPEIHML*

Sequence

>CNT30614070
GTCAAAACTTAGCAAAGGATTCACAATTCACAGGCAATTTTAAAGAGAATATTTAATCAGAAAGATCCAAGAGAAATGTCGAAAAAACCGGAATTAAGAA
CAAAAGTCTAAGAAATCCAGATTTTGTCAATACAAGCATAAAAATCCTGCAACTGGAAGTTGAGGTTTAAGTAGCAAACGACTAAATTGATAAAAGGGTG
GTTTTTACTAGATTACTCTCAGTACTCTTCCTCTTGTTGGTAATCAGCTTCTTCCTCATCCTCGTACTCACCTTCCTCGTCTGCTGTAGCGTCTTGGTAC
TGCTGGTACTCTGAAACCAAATCGTTCATGTTACTCTCAGCTTCTGTGAACTCCATCTCGTCCATTCCCTCACCAGTGTACCAATGCAAGAAAGCCTTCC
TCCTGAACATAGCTGTGAACTGCTCACTCACACGCCTGAACATCTCTTGGATCGAGGTTGAGTTACCAATGAAAGTAGAGGCCATCTTAAGACCAGTTGG
TGGAATGTCACAAACAGTGGACTTCACGTTGTTGGGAATCCACTCCACAAAGTAGGACGAGTTCTTGTTCTGCACATTGAGCATCTGCTCGTCAACTTCC
TTTGTGCTCATCTTTCCACGGAACATGGCAGAGGCAGTGAGGTAACGTCCATGTCTTGGGTCTGCAGCACACATCATGTTCTTGGAGTCAGAGGAGCAAA
ACCCACCATGAAGAAATGAAGACGAGGGAATGGGATCAGATTCACAGCAAGCTTACGCAGGTCGGAGTTAAGCTGACCAGGGAACCTCAAACAGCAAGTC
ACACCAGACATAGTAGCAGAGATCAAGTGGTTCAAATCACCGACTGCAGACAGAGAATGAACCAAGTATGTAAGCCACAGACACATACAACATACAACAT
GTTAAACAAGAGCACCACATCAATAAAGCTTCCAGAAATTCATATGTTATAAACCAAACAGTACACTTCCACAATCATTCTCATTCTCTTCCATACTAGT
AAAGCATTCTGCATATCCCTAATGGTATACGAAGTCCTAGATATTCACATGACAATTATCCAGAAAGTATTGATCCAATGTTGCAGCTTAAGGTTTCAAA
TCGAACAGTATTGTGATACAAAATAATCAAATGTTCAAGATCTAGCAAGCATTATAAGCATAGAACAAACGAGTAACCAAAAGATTTGTGAATTGGATAA
TGGATCTTACAGCTAGGGGTAGTGAGTTTAAGAGTCCTGAAGCAGATATCATACAAGGCCTCGTTATCAAGAACCATACACTCATCTGCATTCTCAACAA
GTTGATGAACAGATAAAGTAGCGTTATAAGGCTCAACAACAGTATCAGAAACCTTAGGCGAAGGAAACACAGAGAACGTAAG