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Detailed information on CNT30402401


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZPN9|TBB2_ELEIN, E-value = 3e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673843Beta vulgarisSetaria viridis36.8796.2682.42438forward
CNT30522713Beta vulgarisSetaria italica26.4384.6481.85314forward
CNT30641074Beta vulgarisNymphaea colorata19.0261.5882.74226forward
CNT30534291Beta vulgarisEucalyptus grandis10.7720.0987.5128forward
CNT30377201Beta vulgarisArabidopsis thaliana26.6855.4285.17317forward
CNT30617295Beta vulgarisSesamum indicum6.92085.3782forward
CNT30728062Beta vulgarisCorchorus capsularis25.1734.3386.29299forward
CNT30381383Beta vulgarisManihot esculenta24.2416.3984.38288forward
CNT30629386Beta vulgarisVigna unguiculata11.4552.7181.62136forward
CNT30196370Beta vulgarisPisum sativum26.4332.9584.39314forward
CNT30486254Beta vulgarisOlea europaea10.8633.6885.27129forward
CNT30710178Beta vulgarisGlycine max18.8652.8386.61224forward
CNT30155931Beta vulgarisPistacia vera7.7429.6884.7892forward
CNT30291318Beta vulgarisTriticum aestivum9.7634.8389.66116forward
CNT30223001Beta vulgarisHordeum vulgare8.7537.4192.31104forward
CNT30390564Beta vulgarisTriticum turgidum8.8434.5492.38105forward
CNT30562824Beta vulgarisActinidia chinensis39.6584.7182.38471forward
CNT30542792Beta vulgarisBrassica napus22.4761.5285.77267forward
CNT30511260Beta vulgarisSolanum lycopersicum9.0126.5590.65107forward
CNT30442409Beta vulgarisAegilops tauschii12.9622.9986.36154forward
CNT30252641Beta vulgarisAvena sativa26.7739.1183.65318forward
CNT30313575Beta vulgarisCamelina sativa4.6323.6190.9155forward
CNT3078381Beta vulgarisBrassica juncea9.0140.0785.98107forward
CNT30261872Beta vulgarisBrassica rapa24.4132.7782.41290forward
CNT30614070Beta vulgarisArabis alpina25.1721.6485.28299forward
CNT3015820Beta vulgarisZea mays36.7895.6281.01437forward
CNT3041960Beta vulgarisChlamydomonas reinhardtii8.7530.581.73104forward
CNT30608822Beta vulgarisGossypium raimondii20.3736.1287.19242forward
CNT30203517Beta vulgarisHelianthus annuus24.4125.883.79290forward
CNT30627268Beta vulgarisDaucus carota22.6421.7385.5269forward
CNT30681848Beta vulgarisTriticum urartu25.1733.7986.29299forward
CNT30722427Beta vulgarisTriticum spelta24.0749.4885.31286forward
CNT30341625Beta vulgarisEragrostis tef26.8532.7283.39319forward
CNT30368415Beta vulgarisSorghum bicolor38.0543.9384.07452forward
CNT30595566Beta vulgarisOryza meridionalis13.832.685.98164forward
CNT30369350Beta vulgarisOryza glumipatula12.2921.0191.1146forward
CNT30433292Beta vulgarisPapaver somniferum20.8823.6683.06248forward
CNT30570854Beta vulgarisVitis vinifera7.2442.7986.0586forward
CNT3033661Beta vulgarisTheobroma cacao11.0362.9888.55131forward
CNT3057373Beta vulgarisAmborella trichopoda12.5427.3482.55149forward
CNT3024644Beta vulgarisPopulus trichocarpa25.1714.6284.28299forward
CNT30322043Beta vulgarisAsparagus officinalis24.9235.3683.11296forward
CNT30119164Beta vulgarisCitrus clementina19.8750.6485.17236forward
CNT30330123Beta vulgarisDioscorea rotundata23.1527.0185.09275forward
CNT3099786Beta vulgarisOryza rufipogon15.8240.9686.17188forward
CNT30117026Beta vulgarisOryza nivara11.4520.2490.44136forward
CNT3050576Beta vulgarisCucumis sativus18.2743.1481.57217forward

Expression of CNT30402401

Peptides detected in this lncRNA

>peptide 1 (36 aa)
GELHLIHTFPSVPMQESLSPEHSCELLTHPPEHLLY*

>peptide 2 (69 aa)
VNSISSIPSPVYQCKKAFLLNIAVNCSLTLLNISCIEVEFPMKVEAMLKPRGGMSQTLDFTLFGIHSTK*

>peptide 3 (57 aa)
MIDGTFTPCMHAECGIAKPYHQSNTNTNNFHIEAKKKTHGNMLEINVATQKNTHSLV*

Sequence

>CNT30402401
GGTGAACTCCATCTCATCCATACCTTCCCCAGTGTACCAATGCAAGAAAGCCTTTCTCCTGAACATAGCTGTGAACTGCTCACTCACCCTCCTGAACATC
TCCTGTATTGAAGTAGAGTTCCCGATGAAAGTCGAGGCCATGCTCAAACCACGAGGTGGGATGTCACAGACACTTGACTTCACATTGTTTGGGATCCACT
CAACAAAGTAGGATGAGTTCTTGTTCTGGACATTAATCATTTGCTCATCGACCTCCTTAGTGGACATCTTTCCCCGGAACATGGCTGAGGCGGTGAGGTA
CCGCCCGTGCCTGGGGTCAAGGGGGCAAACCCAACCATGAAAAAGTGGAGACGAGGGAAGGGGATCAAGTTTACGGCAAGCTTGCGTAGGTCAGAGTTGA
GTTGACCAGGGAACCGGAGGCAACAAGTGACACCACTCATGGTAGCAGAGATCAAATGGTTAAGATCGCCAACTGCATCCAAATACCATGAATAGGTTAG
AGGATCACCATATTCAGGCAACAATACTTTAAAGGCATGTGTCATTATGCAGAAGTAGGCACAAAACATGTTTTCTTCAGTTTATCTTAACAAATCAAGC
AAATATTAGAACACTGTAAAGTCTCGAACTAAGTTGATGATGTAACAAACACGAAGTGGGTTAGTGTGAACACTGTGAAGTAGCAAAATTTCAGCATTGT
CCTATGATCGTCAGCCAATCAAACACACCTATTGTAGTCAGAATGGGGAACATTCATGGCCATTGCACAGCTTAGCATCAATAATGATAGATGGAACATT
TACACCATGCATGCATGCTGAATGCGGAATAGCTAAACCCTATCACCAATCAAACACAAACACCAACAATTTCCATATTGAAGCAAAAAAGAAAACACAT
GGAAACATGCTTGAGATCAACGTAGCAACACAAAAAAATACTCACAGCTTGGTGTAGTAAGCTTAAGAGTCCTGAAGCAAATATCATATAGTGCTTCATT
GTCCAACACCATACACTCGTCTGCATTTTCAACAAGTTGGTGAACAGAGAGGGTGAGCATCATCCTATCAGGGTACTCCTCCCTAATCTTTGAGATCAAC
AAGGTACCCATACCAGAACCCGTTCCTCCACCCAAAGAATGGCACACCTGGAATCCTGCATTTAATAAAAGACGAAGGTCAAAAAGCC