Detailed information on CNT30710178


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H7U1|TBB2_ORYSJ, E-value = 2e-65

BLAST vs NONCODE:
NONGMAT000204, E-value = 6e-163

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377201Glycine maxArabidopsis thaliana64.8648.0886.18275forward
CNT30727252Glycine maxCorchorus capsularis68.438.7284.83290forward
CNT30381383Glycine maxManihot esculenta46.4611.2189.34197forward
CNT30402401Glycine maxBeta vulgaris52.8318.8686.61224forward
CNT30196370Glycine maxPisum sativum66.9829.883.45284forward
CNT3092760Glycine maxSolanum tuberosum32.0819.6586.03136forward
CNT30390564Glycine maxTriticum turgidum43.8761.1884.95186forward
CNT30562824Glycine maxActinidia chinensis67.4551.4483.92286forward
CNT30511260Glycine maxSolanum lycopersicum38.6840.6985.37164forward
CNT30253208Glycine maxAvena sativa33.7311.986.01143forward
CNT30261872Glycine maxBrassica rapa64.1530.7381.99272forward
CNT305432Glycine maxZea mays33.7338.9687.41143forward
CNT30209019Glycine maxHelianthus annuus66.9834.0184.51284forward
CNT30627268Glycine maxDaucus carota66.9822.9482.75284forward
CNT30368415Glycine maxSorghum bicolor67.4527.7983.22286forward
CNT30369370Glycine maxOryza glumipatula30.919.7685.5131forward
CNT30422340Glycine maxPapaver somniferum68.434.2487.59290forward
CNT3024644Glycine maxPopulus trichocarpa67.6914.0385.02287forward
CNT30119164Glycine maxCitrus clementina67.6961.5983.97287forward
CNT3036150Glycine maxCucumis melo23.8229.9789.11101forward
CNT30332119Glycine maxDioscorea rotundata41.2727.5684175forward
CNT30116105Glycine maxOryza nivara27.3615.7286.21116forward
CNT30602702Glycine maxGaldieria sulphuraria2511.7683.96106forward
CNT3050576Glycine maxCucumis sativus64.6254.4780.29274forward

Expression of CNT30710178

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MPFSNQLEGYHRQWISHCWGSIPQSMMSSCSE

>peptide 2 (31 aa)
MQEGLSAEHSCELLTHPPEHFLNRGRVANEG*

>peptide 3 (34 aa)
MKVDAIFKPVGGISQTVDFTLLGIHSTKYDEFLF*

>peptide 4 (39 aa)
KQSKIPKKIFRSRDEKNTTLTEYHNKTQTRTPCKSLLLF*

>peptide 5 (40 aa)
MLLSASVNSISSIPSPVYQCKKAFLRNIAVNCSLTLLNIS*

Sequence

>CNT30710178
AAACAATCCAAAATCCCGAAAAAGATATTCAGGTCAAGGGATGAAAAAAACACAACATTAACAGAGTATCACAACAAAACACAAACAAGAACACCCTGCA
AATCACTACTATTGTTTTAAACCTCATCTTCCTGAGTTGCATCTTGGTATTGCTGGTACTCGGACACAAGGTCATTCATGTTGCTCTCAGCTTCAGTAAA
CTCCATTTCATCCATACCTTCTCCAGTGTACCAATGCAAGAAGGCCTTTCTGCGGAACATAGCTGTGAATTGCTCACTCACCCTCCTGAACATTTCTTGA
ATAGAGGTAGAGTTGCCAATGAAGGTTGATGCCATTTTCAAACCAGTTGGAGGGATATCACAGACAGTGGATTTCACATTGTTGGGGATCCATTCCACAA
AGTATGATGAGTTCTTGTTCTGAA