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Detailed information on CNT30332119


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT004015, E-value = 1e-50

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674320Dioscorea rotundataSetaria viridis55.4353.9185.23352forward
CNT30534291Dioscorea rotundataEucalyptus grandis75.5975.3582.5480forward
CNT30617295Dioscorea rotundataSesamum indicum30.5547.3280.93194forward
CNT30710178Dioscorea rotundataGlycine max27.5641.2784175forward
CNT30168132Dioscorea rotundataPistacia vera19.6930.4183.2125forward
CNT3092760Dioscorea rotundataSolanum tuberosum28.526.1685.08181forward
CNT30390564Dioscorea rotundataTriticum turgidum26.7755.9290170forward
CNT30562825Dioscorea rotundataActinidia chinensis39.5345.4784.06251forward
CNT30586804Dioscorea rotundataMusa acuminata21.117.3687.31134forward
CNT30511260Dioscorea rotundataSolanum lycopersicum23.6237.2285.33150forward
CNT30553024Dioscorea rotundataOryza glaberrima26.311.6986.23167forward
CNT305432Dioscorea rotundataZea mays26.345.589.82167forward
CNT3041960Dioscorea rotundataChlamydomonas reinhardtii21.139.385.82134forward
CNT30722533Dioscorea rotundataTriticum spelta41.7346.4984.15265forward
CNT30369370Dioscorea rotundataOryza glumipatula26.4625.3488.69168forward
CNT30433292Dioscorea rotundataPapaver somniferum26.315.9486.23167forward
CNT30119164Dioscorea rotundataCitrus clementina28.1938.4183.8179forward
CNT3036150Dioscorea rotundataCucumis melo15.4329.0884.6998forward
CNT30150001Dioscorea rotundataBrachypodium distachyon11.6523.4290.5474forward
CNT30117026Dioscorea rotundataOryza nivara37.4835.4284.45238forward
CNT30333708Dioscorea rotundataCynara cardunculus32.2825.3185.37205forward
CNT3050576Dioscorea rotundataCucumis sativus19.3724.4585.37123forward

Expression of CNT30332119

Peptides detected in this lncRNA

>peptide 1 (97 aa)
MISSLDFLLFLLFFVLFIRCCILVLLVLSDEIVHVALSLSEFHFIHALTSVPVQECLPPEHGGELLTNPAEHLLNGGSGHVGGQQHTSCSWSPTSVG*

>peptide 2 (48 aa)
MDKENRWHIKSDSKSRNNSTSRECHTSQAIHKHYEYKYGDVYLSRLTR*

>peptide 3 (54 aa)
MFLESHICWVSSGTVRARYCWEPLEVRGANPTMKKWRRGNGIRFTASLRRSELS*

>peptide 4 (37 aa)
MEVAAMSGVSSTHHVLGVPHLLGELRYSQGPILLGAP*

>peptide 5 (40 aa)
MLLSASVNSISSMPSPVYQCKNAFLLNMAVNCSLTLRNIS*

>peptide 6 (45 aa)
WIKKTGGTLSQTLKAETTAHPGNVIQAKPYTNIMSTNMVMSISQD*

Sequence

>CNT30332119
GATGGATAAAGAAAACAGGTGGCACATTAAGTCAGACTCTAAAAGCAGAAACAACAGCACATCCAGGGAATGTCATACAAGCCAAGCCATACACAAACAT
TATGAGTACAAATATGGTGATGTCTATCTCTCAAGATTAACAAGATGATATCAAGCTTGGACTTCCTCCTCTTCCTCCTCTTCTTCGTACTCTTCATCCG
CTGTTGCATCCTGGTACTGCTGGTACTCAGCGACGAGATCGTTCATGTTGCTCTCAGCCTCAGTGAATTCCATTTCATCCATGCCCTCACCAGTGTACCA
GTGCAAGAATGCCTTCCTCCTGAACATGGCGGTGAACTGCTCACTAACCCTGCGGAACATCTCCTGAATGGAGGTAGCGGCCATGTCGGGGGTCAGCAGC
ACACATCATGTTCTTGGAGTCCCACATCTGTTGGGTGAGCTCAGGTACAGTCAGGGCCCGATACTGCTGGGAGCCCCTTGAGGTGAGAGGTGCAAACCCA
ACCATGAAAAAGTGGAGACGTGGGAATGGGATCAGGTTCACGGCAAGCTTGCGAAGATCAGAGTTGAGCTGACCAGGGAACCGGAGGCAACATGTGATGC
CACTCATGGTGGCAGAGATCAGATGGTTCAGATCA