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Detailed information on CNT30341625


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43697|TBB5_MAIZE, E-value = 5e-144

BLAST vs NONCODE:
NONBNAT007651, E-value = 4e-95

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Eragrostis tefOryza sativa32.6255.588.99318forward
CNT30675224Eragrostis tefSetaria viridis52.2161.2587.03509forward
CNT30522155Eragrostis tefSetaria italica32.135.6184.66313forward
CNT30641074Eragrostis tefNymphaea colorata30.3680.6588.18296forward
CNT30534291Eragrostis tefEucalyptus grandis21.9533.5984.11214forward
CNT30516889Eragrostis tefJuglans regia23.2837.5283.7227forward
CNT30377201Eragrostis tefArabidopsis thaliana41.1370.186.78401forward
CNT30728062Eragrostis tefCorchorus capsularis45.1350.5282.95440forward
CNT30381383Eragrostis tefManihot esculenta25.1313.9484.9245forward
CNT30402401Eragrostis tefBeta vulgaris32.7226.8583.39319forward
CNT30629386Eragrostis tefVigna unguiculata15.4958.5388.08151forward
CNT30196370Eragrostis tefPisum sativum46.6747.7482.86455forward
CNT30486254Eragrostis tefOlea europaea18.9748.385.95185forward
CNT30708222Eragrostis tefGlycine max30.4673.782.83297forward
CNT30168132Eragrostis tefPistacia vera13.4431.8781.68131forward
CNT3092760Eragrostis tefSolanum tuberosum33.9547.8378.25331forward
CNT30291318Eragrostis tefTriticum aestivum26.4677.4884.11258forward
CNT30223001Eragrostis tefHordeum vulgare13.2346.490.7129forward
CNT30390564Eragrostis tefTriticum turgidum18.0557.8992.05176forward
CNT30567082Eragrostis tefActinidia chinensis35.0877.7384.5342forward
CNT30586804Eragrostis tefMusa acuminata17.4422.0288.82170forward
CNT30542792Eragrostis tefBrassica napus26.6759.9184.62260forward
CNT30511260Eragrostis tefSolanum lycopersicum14.6735.4888.11143forward
CNT30553024Eragrostis tefOryza glaberrima38.3626.1982.62374forward
CNT30442409Eragrostis tefAegilops tauschii37.2354.1889.53363forward
CNT30252641Eragrostis tefAvena sativa52.8263.3590.68515forward
CNT30261872Eragrostis tefBrassica rapa62.6769.0480.52611forward
CNT30614070Eragrostis tefArabis alpina42.5630.0385.3415forward
CNT3015387Eragrostis tefZea mays36.7222.1387.99358forward
CNT3041960Eragrostis tefChlamydomonas reinhardtii18.8753.9689.13184forward
CNT30608822Eragrostis tefGossypium raimondii40.9259.5582.71399forward
CNT30203517Eragrostis tefHelianthus annuus61.9553.7480.46604forward
CNT30627268Eragrostis tefDaucus carota43.934.5781.54428forward
CNT30681848Eragrostis tefTriticum urartu55.961.5883.85545forward
CNT30722476Eragrostis tefTriticum spelta41.9561.1488.51409forward
CNT30368415Eragrostis tefSorghum bicolor38.0536.0589.22371forward
CNT30595966Eragrostis tefOryza meridionalis25.6440.7885.2250forward
CNT30370114Eragrostis tefOryza glumipatula47.0856.0485.19459forward
CNT30433323Eragrostis tefPapaver somniferum62.9756.2880.62614forward
CNT30570854Eragrostis tefVitis vinifera14.6771.1485.31143forward
CNT30706519Eragrostis tefPrunus avium45.7453.883.86446forward
CNT3033661Eragrostis tefTheobroma cacao19.6992.3184.38192forward
CNT3057373Eragrostis tefAmborella trichopoda24.7244.2281.74241forward
CNT3024558Eragrostis tefPopulus trichocarpa62.5633.4283.93610forward
CNT30322043Eragrostis tefAsparagus officinalis60.2170.1381.6587forward
CNT30119164Eragrostis tefCitrus clementina27.5957.7382.53269forward
CNT3036150Eragrostis tefCucumis melo10.6730.8685.58104forward
CNT30330123Eragrostis tefDioscorea rotundata35.0833.683.92342forward
CNT30150001Eragrostis tefBrachypodium distachyon6.8721.294.0367forward
CNT3099978Eragrostis tefOryza rufipogon29.7435.885.17290forward
CNT30575530Eragrostis tefOryza barthii49.7453.7185.36485forward
CNT30117026Eragrostis tefOryza nivara24.8236.0185.12242forward
CNT30333708Eragrostis tefCynara cardunculus40.5148.7781.77395forward
CNT3050576Eragrostis tefCucumis sativus12.6224.4586.18123forward

Expression of CNT30341625

Peptides detected in this lncRNA

>peptide 1 (42 aa)
RETFNTKKTGTYSQAVTNKQFRHLVVIKSTVKTIPQFCSNET*

>peptide 2 (85 aa)
MFLESHICCVNSGTVRARYCWDPLEVSGAKPTMKKWRRGKGIKLTASFRRSEFSWPGNRRQQVTPLIVAEIRWFKSPTETKEDRIR

>peptide 3 (75 aa)
MLLSASVNSISSMPSPVYQCKKAFLLNMAVNCSLTRWNISWMEVEFPMKVDAIVRPLGGMSHTLDFTLFGIHSTK*

Sequence

>CNT30341625
CGAGAGACATTTAACACTAAAAAAACAGGAACTTATAGTCAGGCAGTTACGAATAAACAATTTCGTCATCTAGTAGTAATTAAGTCCACAGTTAAAACAA
TCCCACAGTTTTGCAGCAATGAAACATAACACAAAACGCTATCCCAAGGCAATATAGAACGGCTCGAAGCATAAAACCACCTACAATTCTAACGGCACAG
CAAGCAACAGATAGATAGCAACACTGATAACAAGTTAACAACCACCCCATCTACTGAGAAACTAGGCAGGTGGCTTAGGCAGCCTCCTCTTCCTCCTCGT
CGTCGTATTCCTCTTCCTCGTCCGCCGTCGCATCTTGGTACTGCTGGTACTCAGCCACCAGGTCGTTCATGTTGCTCTCGGCCTCGGTGAACTCCATCTC
GTCCATGCCCTCCCCGGTGTACCAGTGCAAGAAAGCCTTCCTCCTGAACATGGCTGTGAACTGCTCGCTCACACGGTGGAACATCTCCTGGATGGAGGTG
GAGTTTCCGATGAAGGTGGACGCCATCGTCAGGCCCCTGGGAGGGATGTCACACACGCTTGACTTCACGTTGTTCGGGATCCACTCCACGAAGTAGGACG
AGTTCTTGTTCTGCACGTTCAACATTTGCTCGTCAACCTCCTTGGTGCTCATCTTCCCTCGGAACATAGCAGAGGCAGTAAGGTAGCGACCGTGCCTGGG
GTCAGCAGCACACATCATGTTCTTGGAATCCCACATCTGCTGTGTCAACTCGGGAACAGTGAGGGCACGGTATTGCTGGGATCCCCTTGAGGTCAGCGGC
GCAAAGCCAACCATGAAGAAATGGAGGCGAGGAAAGGGTATTAAGTTGACTGCAAGCTTCCGAAGGTCAGAGTTCAGCTGGCCAGGGAACCGCAGGCAGC
AGGTCACACCACTCATTGTTGCAGAAATAAGATGGTTCAAATCACCGACTGAAACAAAAGAAGATAGAATCAGAT