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Detailed information on CNT30522155


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H7U1|TBB2_ORYSJ, E-value = 2e-114

BLAST vs NONCODE:
NONBNAT004015, E-value = 4e-67

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Setaria italicaOryza sativa20.2531.0694.94178forward
CNT30641079Setaria italicaNymphaea colorata36.5243.290.97321forward
CNT30534291Setaria italicaEucalyptus grandis24.1233.2882.55212forward
CNT30377262Setaria italicaArabidopsis thaliana37.3256.1684.76328forward
CNT30617295Setaria italicaSesamum indicum9.921.2285.0687forward
CNT30727252Setaria italicaCorchorus capsularis25.1429.5183.71221forward
CNT30629386Setaria italicaVigna unguiculata29.58100.7883.08260forward
CNT30486254Setaria italicaOlea europaea19.845.4386.21174forward
CNT30708222Setaria italicaGlycine max23.3250.8784.39205forward
CNT3092760Setaria italicaSolanum tuberosum16.1520.5283.8142forward
CNT30291318Setaria italicaTriticum aestivum29.3577.4887.98258forward
CNT30223001Setaria italicaHordeum vulgare17.6355.7690.32155forward
CNT30390564Setaria italicaTriticum turgidum21.2761.5189.3187forward
CNT30562825Setaria italicaActinidia chinensis29.8147.4684.73262forward
CNT30586804Setaria italicaMusa acuminata26.3930.0592.67232forward
CNT30511260Setaria italicaSolanum lycopersicum17.6338.4684.52155forward
CNT30553024Setaria italicaOryza glaberrima58.8236.291.1517forward
CNT30442409Setaria italicaAegilops tauschii36.4147.7685.31320forward
CNT30253208Setaria italicaAvena sativa59.2743.3483.88521forward
CNT30261872Setaria italicaBrassica rapa35.9535.7186.71316forward
CNT305432Setaria italicaZea mays18.6644.6990.24164forward
CNT3041960Setaria italicaChlamydomonas reinhardtii20.9353.9689.67184forward
CNT30203517Setaria italicaHelianthus annuus36.2928.3883.7319forward
CNT30627268Setaria italicaDaucus carota26.5118.8281.55233forward
CNT30681848Setaria italicaTriticum urartu36.0635.8288.33317forward
CNT30722476Setaria italicaTriticum spelta36.4147.8384.38320forward
CNT30341625Setaria italicaEragrostis tef35.6132.184.66313forward
CNT30361420Setaria italicaSorghum bicolor27.6557.1897.12243forward
CNT30595966Setaria italicaOryza meridionalis26.6238.1793.16234forward
CNT30370114Setaria italicaOryza glumipatula34.9337.4891.53307forward
CNT30433292Setaria italicaPapaver somniferum21.7318.2380.63191forward
CNT30570854Setaria italicaVitis vinifera17.0674.6386.67150forward
CNT30706519Setaria italicaPrunus avium29.243183.27257forward
CNT3033661Setaria italicaTheobroma cacao17.9775.9683.54158forward
CNT3054138Setaria italicaAmborella trichopoda25.7144.5879.2226forward
CNT3024644Setaria italicaPopulus trichocarpa32.6514.0383.62287forward
CNT30322043Setaria italicaAsparagus officinalis38.6840.6286.76340forward
CNT30119164Setaria italicaCitrus clementina22.6442.780.4199forward
CNT3036150Setaria italicaCucumis melo12.432.3483.49109forward
CNT30330123Setaria italicaDioscorea rotundata2420.7385.78211forward
CNT30150001Setaria italicaBrachypodium distachyon8.323.190.4173forward
CNT3099978Setaria italicaOryza rufipogon36.6339.7591.3322forward
CNT30575530Setaria italicaOryza barthii36.0635.1191.48317forward
CNT30116105Setaria italicaOryza nivara18.221.6896.25160forward
CNT30333708Setaria italicaCynara cardunculus36.7539.8882.97323forward
CNT3050576Setaria italicaCucumis sativus12.9722.6682.46114forward

Expression of CNT30522155

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MFLASHICWVSSGTVRARYCWEPREVSGAKPTMKKWRRGNGMRLTASL

>peptide 2 (48 aa)
MDQLVAVLSPGGLLVPPRPPRSLPPRRRLRPGTAGTRTRGRSCCSRPR*

>peptide 3 (29 aa)
YCDSQKKITQLIYRKLVANGSGLDGKEVA*

>peptide 4 (67 aa)
MLLSASVNSISSMPSPVYQCRKAFLRNMAVNCSLTRRNISWMEAILRPVGGMSQTVDLTLLGIHSTK*

Sequence

>CNT30522155
AATATTGTGACTCGCAAAAAAAAATTACCCAATTAATTTATCGGAAACTTGTTGCCAATGGTAGTGGTTTGGATGGTAAAGAAGTTGCCTAACAGTAGTA
ATTAATCGTCAGACACATGAGAAATAACAGTTGAAAGCAGCAGGGTAGGGTAGTATTGCACACACCATCGTGTGCTGCCCTGCCTCTGCCTACCTGTTTT
AACAAGCACTAATAAGATTAACAAGGAAGTAAACAACACAAGGCATTAAGATTAAATAGGAAGCAGCAGCAAGCAACACACATGAATGGATCAGCTAGTA
GCGGTGCTTAGTCCTGGAGGTCTTCTGGTTCCTCCTCGTCCTCCTCGTAGTCTCCCTCCTCGTCGGCGGTTGCGTCCTGGTACTGCTGGTACTCGGACAC
GAGGTCGTTCATGTTGCTCTCGGCCTCGGTGAACTCCATCTCGTCCATGCCCTCGCCCGTGTACCAGTGCAGGAAGGCCTTCCTGCGGAACATGGCGGTG
AACTGCTCGCTGACGCGGCGGAACATCTCCTGGATGGAGGCCATCTTGAGGCCGGTGGGCGGGATGTCGCAGACGGTGGACTTGACGTTGTTGGGGATCC
ACTCCACGAAGTAGGAGGAGTTCTTGTTCTGCACGTTGAGCATCTGCTCGTCCACCTCCTTGGTGCTCATCTTGCCGCGGAACATGGCGGAGGCGGTGAG
GTAGCGGCCGTGGCGGGGGTCGGCGGCGCACATCATGTTCTTGGCGTCCCACATCTGCTGGGTGAGCTCCGGGACCGTCAGGGCGCGGTACTGCTGGGAG
CCGCGGGAGGTGAGCGGCGCGAAGCCGACCATGAAGAAGTGGAGGCGCGGGAACGGGATGAGGTTGACGGCCAGCTTGC