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Detailed information on CNT30728063


BLAST search results

BLAST vs Swiss-Prot:
sp|P33632|TBB3_ANEPH, E-value = 3e-90

BLAST vs NONCODE:
NONPOPT002096, E-value = 1e-100

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Corchorus capsularisOryza sativa38.8258.8181.01337forward
CNT30674634Corchorus capsularisSetaria viridis37.3344.6986.11324forward
CNT30381383Corchorus capsularisManihot esculenta39.9819.7588.18347forward
CNT30196370Corchorus capsularisPisum sativum45.0541.0385.68391forward
CNT30390564Corchorus capsularisTriticum turgidum20.2857.8989.77176forward
CNT30562824Corchorus capsularisActinidia chinensis40.7863.6786.72354forward
CNT30261872Corchorus capsularisBrassica rapa49.7748.8182.64432forward
CNT30614070Corchorus capsularisArabis alpina44.3527.8684.16385forward
CNT3041960Corchorus capsularisChlamydomonas reinhardtii20.9753.3783.52182forward
CNT30627268Corchorus capsularisDaucus carota45.0531.5882.35391forward
CNT30368415Corchorus capsularisSorghum bicolor64.0654.0381.12556forward
CNT30433292Corchorus capsularisPapaver somniferum45.3937.682.49394forward
CNT3021874Corchorus capsularisPopulus trichocarpa45.3970.8687.31394forward
CNT3036150Corchorus capsularisCucumis melo16.8243.3286.99146forward
CNT30150001Corchorus capsularisBrachypodium distachyon11.6431.9688.12101forward
CNT30117026Corchorus capsularisOryza nivara15.5520.0985.19135forward
CNT3050576Corchorus capsularisCucumis sativus30.352.2982.51263forward

Expression of CNT30728063

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MLLSASVNSISSIPSPVYQCKKAFLLNMAVNCSLTLLNIS*

>peptide 2 (40 aa)
MEVELPMKVDAIDRPRGGISQTLDLTLFGIHSTKYEEFLF*

>peptide 3 (57 aa)
MSRVCSTHHVRGANPTIKKCRRGKGMRFTASFRRSELSWPGNLRQHVTPLMVADIRWF

>peptide 4 (69 aa)
DQYRCRFDYYYQENKQIKAKWRDIDKTTKSNRAAGLEFKHRERVIQTTFHICKLLKLAENCHFPTLKAV*

>peptide 5 (81 aa)
MLNSSFLILLILNIILGCCILVLLILRYKVIHVALSLSELHFIHSFPSVPVQESLPPKHGSELLTYSPEHLLNGGRVTDES*

Sequence

>CNT30728063
AGACCAATATAGGTGCAGATTTGACTACTACTACCAAGAAAACAAACAGATAAAAGCAAAATGGAGAGATATAGACAAGACTACTAAATCGAATAGAGCA
GCAGGGCTAGAATTCAAACATAGAGAGAGAGTAATACAAACAACTTTTCACATATGTAAACTACTCAAACTAGCAGAAAATTGCCACTTTCCAACTCTCA
AAGCAGTATAACGAGGCATTACCACATCCCACAATAGAGTAGCATAGGGCCTTTAGTATTTAGATCTCTCACATCTCATGCTCAATAGTTCCTTCCTCAT
CCTCCTCATACTCAACATCATCCTCGGCTGTTGCATCCTGGTACTGCTGATACTCAGATACAAGGTCATTCATGTTGCTCTCAGCCTCAGTGAACTCCAT
TTCATCCATTCCTTCCCCAGTGTACCAGTGCAAGAAAGCCTTCCTCCTAAACATGGCAGTGAACTGCTCACTTACTCTCCTGAACATCTCCTGAATGGAG
GTCGAGTTACCGATGAAAGTTGATGCCATAGACAGGCCACGAGGAGGAATATCACAAACACTGGACTTGACATTGTTTGGAATCCACTCAACAAAGTATG
AAGAGTTCTTGTTTTGAACATTAATCATTTGCTCATCAACCTCTTTGGTGCTCATCTTGCCCCTGAACATGGCAGAGGCTGTGAGGTAACGACCATGTCG
AGGGTCTGCAGCACACATCATGTGAGAGGAGCAAATCCAACCATAAAGAAGTGCAGACGAGGGAAAGGAATGAGGTTCACTGCCAGTTTTCGGAGGTCAG
AATTGAGTTGGCCAGGGAACCTAAGGCAGCATGTGACACCACTCATGGTTGCAGATATCAGATGGTTC