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Detailed information on CNT30369370


BLAST search results

BLAST vs Swiss-Prot:
sp|P25862|TBB1_AVESA, E-value = 2e-50

BLAST vs NONCODE:
NONPOPT002096, E-value = 3e-30

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678154Oryza glumipatulaSetaria viridis42.8446.4892.96284forward
CNT30534291Oryza glumipatulaEucalyptus grandis24.7425.7584.76164forward
CNT30381383Oryza glumipatulaManihot esculenta30.6211.5584.24203forward
CNT30710178Oryza glumipatulaGlycine max19.7630.985.5131forward
CNT30390564Oryza glumipatulaTriticum turgidum45.8510088.16304forward
CNT30586804Oryza glumipatulaMusa acuminata39.6734.0790.11263forward
CNT30511260Oryza glumipatulaSolanum lycopersicum38.3163.0384.25254forward
CNT301973Oryza glumipatulaZea mays28.0577.8293.55186forward
CNT30363168Oryza glumipatulaSorghum bicolor31.2220.9990.82207forward
CNT30119164Oryza glumipatulaCitrus clementina25.1935.8483.23167forward
CNT3036150Oryza glumipatulaCucumis melo17.0433.5384.96113forward
CNT30332119Oryza glumipatulaDioscorea rotundata25.3426.4688.69168forward
CNT3099978Oryza glumipatulaOryza rufipogon70.1457.4198.92465forward
CNT30116105Oryza glumipatulaOryza nivara24.1321.6893.75160forward
CNT3050576Oryza glumipatulaCucumis sativus18.5524.4586.18123forward

Expression of CNT30369370

Peptides detected in this lncRNA

>peptide 1 (37 aa)
DSNKAAARFSSMQQDKRQQREQSKPVQESNTLPKHMR*

>peptide 2 (48 aa)
QTATKQPQDSHRCSKTRDSNGSNQSQYKNPIHSPNICDSIRIQTWSGR*

>peptide 3 (43 aa)
MLLSASVNSISSMPSPVYQCKKAFLLNMAVNCSLTRRNISWME*

>peptide 4 (56 aa)
MQEGLPPEHGGELLAHAAEHLLDGVGRVLVLDVDHLLVHLLGAHLAAEHGGGREVAA

>peptide 5 (51 aa)
RQQQSSRKILIDAARQETATGAIKASTRIQYTPQTYAIAYGSKHGLVGETD*

Sequence

>CNT30369370
CAGACAGCAACAAAGCAGCCGCAAGATTCTCATCGATGCAGCAAGACAAGAGACAGCAACGGGAGCAATCAAAGCCAGTACAAGAATCCAATACACTCCC
CAAACATATGCGATAGCATACGGATCCAAACATGGTCTGGTAGGTGAAACGGATTAAAGTGGCAGTAGCATCAGCGGCGCTACGTGACCACAGAGCATTG
TACTACTACTACATTACCCAAAAGCACATAACCAATTAAGCATCATCATACCGAAACAATAATAAAGATTGCCCAAACGGTAGGACACAACAGGCGACAC
TCAAGATGGGATCCCAGGAGAAACTCCGGCGAGATTACTCGTCTTCGGGGACCTGCTCCTCTTCGTCCTCGTAGTCGCCCTCCTCGTCGGCGGTGGCATC
CTGATACTGCTGGTACTCGGAGACAAGGTCGTTCATGTTGCTCTCGGCCTCGGTGAACTCCATCTCGTCCATGCCCTCGCCGGTGTACCAATGCAAGAAG
GCCTTCCTCCTGAACATGGCGGTGAACTGCTCGCTCACGCGGCGGAACATCTCCTGGATGGAGTAGGACGAGTTCTTGTTCTGGACGTTGATCATCTGCT
CGTCCACCTCCTTGGTGCTCATCTTGCCGCGGAACATGGCGGAGGCCGTGAGGTAGCGGCCAT