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Detailed information on CNT30252641


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRB0|TBB3_WHEAT, E-value = 2e-122

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Avena sativaOryza sativa32.8446.685.02267forward
CNT30675224Avena sativaSetaria viridis57.4456.286.72467forward
CNT30641074Avena sativaNymphaea colorata39.3687.1983.75320forward
CNT30377201Avena sativaArabidopsis thaliana44.1662.7687.19359forward
CNT30728062Avena sativaCorchorus capsularis56.2152.4783.81457forward
CNT30381383Avena sativaManihot esculenta33.0915.3184.76269forward
CNT30402401Avena sativaBeta vulgaris39.1126.7783.65318forward
CNT30196370Avena sativaPisum sativum44.1637.6783.84359forward
CNT30708222Avena sativaGlycine max35.6771.9681.72290forward
CNT30223001Avena sativaHordeum vulgare15.3844.9690.4125forward
CNT30567082Avena sativaActinidia chinensis36.6567.7383.89298forward
CNT30542792Avena sativaBrassica napus33.4662.6786.03272forward
CNT30442409Avena sativaAegilops tauschii44.6554.1894.49363forward
CNT30261872Avena sativaBrassica rapa62.1257.0680.99505forward
CNT30614070Avena sativaArabis alpina42.3124.8986.34344forward
CNT3015387Avena sativaZea mays39.9820.0988.31325forward
CNT30608822Avena sativaGossypium raimondii49.0859.5581.95399forward
CNT30209019Avena sativaHelianthus annuus59.4157.8480.54483forward
CNT30627268Avena sativaDaucus carota48.4631.8383.76394forward
CNT30681848Avena sativaTriticum urartu62.1257.0685.35505forward
CNT30341625Avena sativaEragrostis tef63.3552.8290.68515forward
CNT30364844Avena sativaSorghum bicolor45.6385.0987.87371forward
CNT30369403Avena sativaOryza glumipatula46.3757.3885.15377forward
CNT30433323Avena sativaPapaver somniferum60.5245.180.49492forward
CNT3024644Avena sativaPopulus trichocarpa62.1224.6984.75505forward
CNT30322043Avena sativaAsparagus officinalis62.9861.1782.03512forward
CNT30330123Avena sativaDioscorea rotundata42.3133.7985.17344forward
CNT30117026Avena sativaOryza nivara19.3123.3689.17157forward
CNT3050576Avena sativaCucumis sativus25.5841.3582.21208forward

Expression of CNT30252641

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MKKWRRGKGIKLTASFRRSEFSCPGKRRQQ

>peptide 2 (93 aa)
MPSPVYQCKKAFLLNIAVNCSLTRRNISWIEVELPTKVDDIERPVGGMSHTLDFTLLGIHSTKYDEFLFWTFSICSSTSLVLIFPRNIAEAVR*

>peptide 3 (49 aa)
MTSRGLWEGCHTHLTSHCWGSTQQSTTSSCSGRSASAHQPPWCSSSHGT*

>peptide 4 (52 aa)
ANITIRSVEAAPSTYTNSSKNRFTKARKASIKRHEPPKDLSAPQAPPNRQKS*

>peptide 5 (70 aa)
LISQFAASKQHHQHTQTVQKIGSPKQEKHLLSVMNHLKIYPHRKHHQTDRNRKHKAHLPDSKTAEQGQMA*

Sequence

>CNT30252641
CGCTAATATCACAATTCGCAGCGTCGAAGCAGCACCATCAACATACACAAACAGTTCAAAAAATCGGTTCACCAAAGCAAGAAAAGCATCTATTAAGCGT
CATGAACCACCTAAAGATCTATCCGCACCGCAAGCACCACCAAACCGACAGAAATCGTAAACACAAGGCACATCTACCAGACAGCAAGACGGCTGAACAA
GGTCAGATGGCTTAGGCAGCCTCCTCTTCCTCTTCCTCCTCGTACTCTTCCTCCTCATCAGCTGTGGCATCCTGGTACTGCTGGTACTCGGCCACCAGTG
AACTCCATCTCATCCATGCCCTCCCCGGTGTACCAGTGCAAGAAAGCCTTCCTCCTGAACATAGCTGTGAACTGCTCGCTCACACGACGGAACATCTCCT
GGATTGAGGTTGAGTTGCCGACAAAGGTGGATGACATCGAGAGGCCTGTGGGAGGGATGTCACACACACTTGACTTCACATTGTTGGGGATCCACTCAAC
AAAGTACGACGAGTTCTTGTTCTGGACGTTCAGCATCTGCTCATCAACCTCCTTGGTGCTCATCTTCCCACGGAACATAGCAGAGGCTGTGAGGTAGCGA
CCATGCCTTGGGTCAGCAGCACACATCATGTTCTTTGAGTCCCACATCTGCTGGGTCAACTCGGGAACAGTGAGGGCACGGTACTGCTGAGAGCCCCTTG
AGGTCAGTGGTGCAAAGCCAACCATGAAGAAATGGAGGCGAGGGAAAGGAATCAAGTTGACTGCTAGTTTCCGGAGGTCAGAGTTCAGCTGTCCAGGGAA
GCGAAGGCAGCAA