Detailed information on CNT30361871


BLAST search results

BLAST vs Swiss-Prot:
sp|P33628|TBA_PICAB, E-value = 9e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522342Sorghum bicolorSetaria italica25.3173.4792.13432forward
CNT30317272Sorghum bicolorCorylus avellana10.1944.7382.18174forward
CNT30555317Sorghum bicolorOryza glaberrima6.840.5681.9116forward
CNT30446069Sorghum bicolorSaccharum spontaneum31.2223.598.12533forward
CNT30129276Sorghum bicolorCorymbia citriodora6.8527.9982.91117forward
CNT30496537Sorghum bicolorDigitaria exilis8.7365.9381.21149forward

Expression of CNT30361871

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MRSNLRSIREKTSATAVLLLIMQTARCTLARSPPGTTVGGW*

>peptide 2 (39 aa)
MQLSANFLIRSRQRSTTSLPTAAEKHIVKLRILLHPQTG*

>peptide 3 (63 aa)
MEKLTVCPGLHLVNHSGLQVDKQGPWNVLPCARFTEECVECIPRNPNRVVTASKQPRLRNWML*

>peptide 4 (46 aa)
MNIPGLSPKYNLFEAMLQEPRSQPYLKQLSELESSEIDQNSTEFLRK

>peptide 5 (30 aa)
GSGRLPPRLRLSALLHRPPTRSSRVSERER*

>peptide 6 (29 aa)
MPRSSPRQSQWAPSRQTRPLERASLRSFH*

>peptide 7 (32 aa)
LRPATSSSPALRPPPSPPNSVVSRLRERKVDD*

>peptide 8 (31 aa)
APAGYLLVSGSPPSSIAPQLGRLASPREKGR*

>peptide 9 (85 aa)
MNECTLRIHEIKFAVNTGKDLSHSCVVADHADCSLHLGQVPSRDYSWWLVVYPALEASRAPVHEATEKDVHVSCSYIFARKQSII*

Sequence

>CNT30361871
GGCTCCGGCCGGCTACCTCCTCGTCTCCGGCTCTCCGCCCTCCTCCATCGCCCCCCAACTCGGTCGTCTCGCGTCTCCGAGAGAGAAAGGTAGATGACTG
ATGCCGTCGGAGAATGAGGGGTGATCTGCGCTGAATCGACAGTTCGGCATGCTCGTCGCCGCCGCCTCCGTTCACTAGCAGGTGTAATGCAATAGCAAAC
AGGGAAACAAATGGGAGGTACAACCATGCAACCCAAGCACTCCTGGTTGACTGATACCAAAGGAAAATAACCATGCATCCAGATGGGATGACTCAATACT
CAGCTTCCTCATCATCATCTTCAACTTCAGCTCCGACTTCCTCATAATCCTTCTCCAGTGCCGCAAGATCCTCCCTTGCCTCTGAGAACTCCCCTTCTTC
CATCCCTTCACCGACATACCAATGAACGAATGCACGCTTCGCATACATGAGATCAAATTTGCGGTCAATACGGGAAAAGACCTCAGCCACAGCTGTGTTG
TTGCTGATCATGCAGACTGCTCGTTGCACCTTGGCCAGGTCCCCTCCAGGGACTACAGTTGGTGGTTGGTAGTTTATCCCGCACTTGAAGCCAGTAGGGC
ACCTGTGCATGAGGCAACAGAGAAAGATGTTCATGTCTCGTGCAGCTACATTTTCGCTAGAAAACAGTCTATAATCTAATATAACTTGGTAAGAGTTGTG
AGCATATACCATGCAGTTGTCTGCCAATTTTCTTATCCGATCAAGGCAAAGATCTACTACTTCTCTTCCAACTGCAGCAGAAAAACATATTGTAAAACTT
CGGATATTACTCCATCCCCAAACAGGATAGTTATTAATAAAGAGCAGAGAACAGTTCCAAAGCATTGTAATTTTTTCAAAATAAGTGCCCCAGGTAAAGA
AAGTGATGTTTTTTGTATGATATGAAGTCATGGACAATACTACAGAAATCATGGCATAGGATGGTTGAACGTTTAAATTATAAGATCCTGACCCCTGTAT
AATATCCAAACTGTTGTGGATTAGTTCTACCTGCCACTTGCTAGTACTATTCAAACACACAAATTTGTTCTTTACGCATTTGCAATGCACCAAAGTTCAA
GATAGGGCTTTCAAACCCCAATTATTTGTGCTCAATTCAATATTGCATTTTAAATTGCAAAACACATTTTCTGTTCTCCAGGAAATGGCTCAGGGTGAGG
GACAACATGTCACACCTGTGTAATGTCCACGGGCAAAGTTGTTTGCAGCATCTTCCTTGTGTGAGATGAGCTGCTCAGGATGGAAAAGCTGACGGTATGC
CCCGGTCTTCACCTCGTCAATCACAGTGGGCTCCAAGTCGACAAACAAGGCCCTTGGAACGTGCTTCCCTGCGCTCGTTTCACTGAAGAATGTGTTGAAT
GCATCCCTCGCAACCCCAACAGAGTTGTCACTGCAAGCAAACAGCCAAGGTTGAGAAATTGGATGCTGTAAAATAGGGGTGCCATCAACTCGTAAAAAAA
GAGCATCCAGCAAAGTTTCTCTAGCTTTTACTTCGGGCTGTGATACACAAGATTGTCCTCAGGATTATGAATATTCCAGGATTATCTCCAAAATACAACC
TTTTTGAGGCTATGCTACAAGAACCCAGAAGTCAGCCCTATCTGAAACAATTATCTGAGCTAGAATCATCTGAGATAGATCAAAACTCGACTGAATTCTT
AAGGAAG