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Detailed information on CNT30489027


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 1e-36

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30269243Olea europaeaChenopodium quinoa63.0123.9386.24218forward
CNT30403468Olea europaeaBeta vulgaris54.3424.2985.11188forward
CNT30506120Olea europaeaNicotiana attenuata63.0137.2682.57218forward
CNT30308418Olea europaeaTriticum aestivum50.8724.4183.52176forward
CNT30385584Olea europaeaTriticum turgidum57.841.4981200forward
CNT30443444Olea europaeaAegilops tauschii30.9211.4985.98107forward
CNT30312227Olea europaeaCamelina sativa75.1461.6183.08260forward
CNT30263848Olea europaeaBrassica rapa79.7765.2581.16276forward
CNT30141877Olea europaeaLolium perenne64.1649.5584.23222forward
CNT30625547Olea europaeaDaucus carota56.0718.6983.51194forward
CNT30688581Olea europaeaTriticum urartu52.631.3382.97182forward
CNT30354836Olea europaeaLactuca sativa74.2844.5482.1257forward
CNT30408809Olea europaeaPapaver somniferum66.4726.6285.22230forward
CNT3027877Olea europaeaTheobroma cacao58.6751.3983.25203forward
CNT30149777Olea europaeaBrachypodium distachyon43.9316.584.87152forward
CNT30558075Olea europaeaPanicum hallii63.0127.6381.65218forward
CNT30335475Olea europaeaCynara cardunculus40.7510.8586.52141forward

Expression of CNT30489027

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MREKSGCRLETSGCKLEKSGCTLEMSGCS*

Sequence

>CNT30489027
ACTAGATGGTGTTATCTTAGGACTAGTAGGTGAATATGCTAGGGAAGGGCTGTATCTTGCTGAGGGATTGTAACTCGGGGACGTAGGACTGTAACTTGGA
GAGGTTGGGCTATACACAGGTGAGGTGGGGCTGTATGATGGAGAAGTTGGACTGTACGATGGCGAGGTGGGGCTATAGGAAGGCGAGGTTGGGCTGTAAG
ATGGAGACGTAGGGCTGTATGAGGGAGAAGTCGGGCTGTAGGCTGGAGACGTCGGGCTGTAAGCTGGAGAAGTCGGGCTGTACGCTGGAGATGTCGGGCT
GTAGCTAGGGGACGTCGGGCTGTAGCTTGGTGACGTTGGGCTGTAA