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Detailed information on CNT30308418


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500604Triticum aestivumCoffea canephora33.5639.3582.23242forward
CNT30378927Triticum aestivumManihot esculenta28.1632.7981.77203forward
CNT30403468Triticum aestivumBeta vulgaris25.824.0383.87186forward
CNT30489027Triticum aestivumOlea europaea24.4150.8783.52176forward
CNT30400472Triticum aestivumTriticum turgidum98.6171.3194.94711forward
CNT30443444Triticum aestivumAegilops tauschii64.2249.7395.68463forward
CNT30668234Triticum aestivumTriticum dicoccoides28.2934.6999.02204forward
CNT30468540Triticum aestivumSaccharum spontaneum64.6353.8185.84466forward
CNT30141877Triticum aestivumLolium perenne61.7299.3388.99445forward
CNT3017147Triticum aestivumZea mays56.8757.3483.17410forward
CNT30216750Triticum aestivumKalanchoe fedtschenkoi22.1932.6584.38160forward
CNT30687691Triticum aestivumTriticum urartu71.9858.1294.8519forward
CNT30408809Triticum aestivumPapaver somniferum41.8934.9579.8302forward
CNT30149777Triticum aestivumBrachypodium distachyon66.9952.4489.65483forward

Expression of CNT30308418

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MDCNHLQRMGCSLTGRVRMPCPQHMVRTEHL*

>peptide 2 (32 aa)
MRATWGCMRATWGCMRVMSGCMRAMSGCMREK*

>peptide 3 (41 aa)
SEKSDCTGSSSLGCLENKHVKDCTWPKKGCSSVKWGCSSGK*

>peptide 4 (57 aa)
MMATLGCKMATSGCMQEMSGCMLARSDYKPVMLDYSSAMWGYSLVMLGCSSEMWGCS*

Sequence

>CNT30308418
GTTCGGAGAAGTCTGACTGTACGGGCTCATCATCCTTGGGCTGCTTGGAGAATAAGCATGTGAAGGACTGTACTTGGCCGAAGAAGGGTTGTAGCTCGGT
GAAGTGGGGCTGTAGTTCGGGGAAGTAGGGCTGTAGCTCGGTGACGTCGGGCTGTAGCCAGGCGATGTAGGGCTGTATGCAGGCGATGTAGGGCTGTATG
AGGGCGACGTGGGGCTGTATGAGGGCGACGTGGGGCTGTATGAGGGTGATGTCGGGCTGTATGAGGGCGATGTCGGGCTGTATGAGGGAGAAGTAGGGCT
GTATGATGGCGACGTTGGGCTGTAAGATGGCGACGTCGGGCTGTATGCAGGAGATGTCGGGCTGTATGCTGGCGAGGTCGGACTATAAACCGGTGATGTT
GGACTATAGCTCGGCGATGTGGGGCTATAGCTTGGTGATGTTGGGCTGTAGCTCGGAGATGTGGGGCTGTAGCTAGGAGATGTGGGGCTGTAGCTGGGCG
ATGCAGGGCTGTATGATGGAGAAGTGGGACTGTAACCATGTCCTGGCCCTGGGCTGAACACCGGAGAAGATGGACTGTAACCACCTCCAGAGGATGGGCT
GTAGTTTGACGGGACGGGTGAGAATGCCATGCCCCCAACATATGGTGAGAACTGAGCATCTGTAATTGGGGAAGCCCTGAAATTTGGACTCAACATTGGT
GACATCATTCCTCCATCACGG