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Detailed information on CNT30443444


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516897Aegilops tauschiiJuglans regia27.8229.381.85259forward
CNT30267761Aegilops tauschiiChenopodium quinoa35.5540.5681.27331forward
CNT30403468Aegilops tauschiiBeta vulgaris18.4722.2282.56172forward
CNT30489027Aegilops tauschiiOlea europaea11.4930.9285.98107forward
CNT30506120Aegilops tauschiiNicotiana attenuata30.0847.8680.36280forward
CNT3091192Aegilops tauschiiSolanum tuberosum24.3832.7682.38227forward
CNT30308418Aegilops tauschiiTriticum aestivum49.7364.2295.68463forward
CNT30398985Aegilops tauschiiTriticum turgidum44.3663.9399.03413forward
CNT30234716Aegilops tauschiiBrassica oleracea18.2662.7382.94170forward
CNT30256655Aegilops tauschiiAvena sativa47.4898.4488.01442forward
CNT30263848Aegilops tauschiiBrassica rapa19.2342.3282.68179forward
CNT30468540Aegilops tauschiiSaccharum spontaneum45.4448.8584.87423forward
CNT30141877Aegilops tauschiiLolium perenne45.7695.0989.2426forward
CNT3067990Aegilops tauschiiLeersia perrieri32.6579.7983.22304forward
CNT30205386Aegilops tauschiiHelianthus annuus35.2345.8780.79328forward
CNT30620243Aegilops tauschiiCajanus cajan22.4562.9584.21209forward
CNT30596736Aegilops tauschiiOryza meridionalis53.3865.8384.71497forward
CNT30354603Aegilops tauschiiLactuca sativa33.345.7980.65310forward
CNT30154770Aegilops tauschiiPrunus persica26.5370.3781.38247forward
CNT3051702Aegilops tauschiiAmborella trichopoda13.4320.4284125forward
CNT30103220Aegilops tauschiiOryza rufipogon100.32100.5481.58934forward
CNT30577473Aegilops tauschiiOryza barthii33.7357.6183.76314forward
CNT30584443Aegilops tauschiiEchinochloa crusgalli48.1264.6585.04448forward
CNT30176441Aegilops tauschiiVigna angularis34.3752.8979.38320forward
CNT30335475Aegilops tauschiiCynara cardunculus34.5924.7981.99322forward

Expression of CNT30443444

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MDCNHLQRMGCSLTGRVRMPCPQHMVRTEHL*

>peptide 2 (41 aa)
SEKSDCTGSSSLGCLENKHVKDCTWPKKGCSSVKWGCSSGK*

>peptide 3 (91 aa)
MMATSGCMQEMSGCMLARSDYKPVMLDYSSAMWGYSLEMWGCSSGMLASMMDWSESMMDCQAYMMERWGCSWAMQGCMMEKWDCNHVLALG*

Sequence

>CNT30443444
TTCGGAGAAGTCTGACTGTACGGGCTCATCATCCTTGGGCTGCTTGGAGAATAAGCATGTGAAGGACTGTACTTGGCCGAAGAAGGGTTGTAGCTCGGTG
AAGTGGGGCTGTAGTTCGGGGAAGTAGGGCTGTAGCTCGGTGACGTCGGGCTGTAGCCAGGCGATGTAGGGCTGTATGCAGGCGATGTAGGGCTGTATGA
GGGCGAGGTAGGGCTGTATGAGGGTGACGTGGGGCTGTATGAGGGCGACGTGGGGCTGTATGAGGGTGATGTCGCGGGCTGTATGAGGGCGATGTCGGGC
TGTATGAGGGAGAAGTAGGGCTGTATGATGGCGACGTCGGGCTGTATGCAGGAGATGTCGGGCTGTATGCTGGCGAGGTCGGACTATAAACCGGTGATGT
TGGACTATAGCTCGGCGATGTGGGGCTATAGCTTGGAGATGTGGGGCTGTAGCTCGGGGATGTTGGCGAGTATGATGGACTGGTCGGAGAGTATGATGGA
CTGCCAGGCGTATATGATGGAGAGGTGGGGCTGTAGCTGGGCGATGCAGGGCTGTATGATGGAGAAGTGGGACTGTAACCATGTCCTGGCCCTGGGCTGA
ACACCGGAGAAGATGGACTGTAACCACCTCCAGAGGATGGGCTGTAGTTTGACGGGACGGGTGAGAATGCCATGCCCCCAACATATGGTGAGAACTGAGC
ATCTGTAATTGGGGAAGCCCTGAAATTTGGACTCAACATTGGTGACATCATTCCTCCATCACGGTACGGTGTCGCGGACATGGGTGAACGCGCTGGTGTC
ATGCCATAGTCCAGACCTTCAACATAGCTTGGAAGCTGAAGCTCAATGGCCTGCTGCAGCATCTGGTCATTCAGATACAATCCACAGCCTCCTGTACCAA
TAGGAGCAAGCTGGCCAAGCATAATGTTCTC